Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00612 ATGTTCACGCCTCAGAGGACGGGGTGGCCTGCTGTATCCCTCACGCCTCGAACCGAACCAAAACTTGCAGTTTCCAATTCCATTCTTGTGGGGAAAGGCAAGGATGTGACTTTTACAGGCGGCCCACCGCCGCCGTTGGGGTCTCTGAACGACGAATTGTATAAAACCTCGACGGCGGTGGATACTGGGGACATGAACGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGACGCGGCCGCAATGGAGCGCAAGGATCGGGAAGCGCTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGCTTTTTGATTATCAGCACAATTTAGGACTTCTTTTAATAGAGAAGAAAGATTGGGCTTCAAAGTATGACCAACTAGGGCAAGATTTAGCAGAAACCGAGGAGATCTTCAAACGCGAACAATCAGCACATTTAATTGCATTATCTGAAGTTGAAACGAGGAGGGATAATTTGAAGAAAGCTCTAGCTGCTGAGAAGCAACATGTTTCTAGTCTTAAAAAGGCTTTATGTGAAGTAAATGAGGAGCGTGCAGAAATCAAGCTTACGTCTCAGAAGAAGTTGGCTGATGCAAATGCTTTGATGCATGGAATTGAGGAGAAATCTTTGGAGTTGCAGAAAAAGTTGAATGCTGCTGAAGCCAAGCTTGCTGAGGTAAATAGGAAGAGCTCAGAGTTGGAGATACGAATGCATGAAGTTGAAGCTCGTGAAAGTGTGCTTCAAACTGAGCAGATATCCTTAGTCACGGGGAAAGAAGCACATCAGGCGACCTCCCATAAAGAAAGAGAAGGCTTACGTAAGTGGCGGCAGAAGTTGCAGGAATGGGAAGAAAGACTGAGCAAGAGTCGTGAATTGCTTAATGATAAAGAGCAGAAGGTAAATGAAAATAGCACAACTGTGAAGCAGAAAGAGAAGGATCTTGAAGAGATGAAGAAGAAGATTGATAGGTCAAGTTCAGTCCTGAAAGAGTGGGAAGATAATGTAAATAGGCAATTAGCAGATGTGGAAGCAAAAGAGAAGATGGAAATCGAGCAACTGCTTGACGAGCAAAGAGTAATTCTACAGAAGAAGAAAGAAGAGTTTGAGTTACAATTGGAAGAAAAGCGGCAGTCTCTGGATAGTGAAGGTAGTACAAGGATAGGAGCAATCAACCGGAAGTATATTGAAACTAATCACGAGAAAGAAAAGTTGGTGAAGCAAGAGCAAGCTTTGGATAAAAAGATGCTTCGAGCAAAGGAGAAAGAGGGTGAGCTTGAACAAAAGATGAAGACTTTGAAATCAAAAGATAAGATTTTGAAAGCTGATGAGAGAAAGCTGGAGGTGGAAAGGTTGCAAATGCTAGATGATAGAGAGAGCTTACAGTCTCTCATTAATGAGATTGAGGAAATCAGGACTGAAAATTCTCAGAAGGAGCGGCAATTTCATGAGGAGAGGGAGAAATTGCAGGTGATGAAAGAAGAGAGATCAGAGCACATTCGTTTACAGTGTCAATTGATGCAGGAAATTGAGAGTTACAGGCTTCAGAACAAAATAGTTACGAAAGAACATGAGGATCTTAAGCAGGAAAGGGTCAAATTTGAGAGAGACTGGGAAGCCTTAGATGAAAAAAGGGCTGAAATACATAATGAACTTAGAGATCTTGTGGAGGAGAGGAAGAAATTAGAGATCTTGCAAGGAACAGAGGAGGAAAGGTTGAGAAGTGAGAAAAATGAGATGCTAATTTATATGCTGAGAGAGTTGGAGAATGTCAAACAAGAAAAGGAATTATTTGCCTCAACTACAAGGCATGAGCAGCGAGCCTTGTCTGAGCAAGCTCAAAATAAGCATAACCAACTACTTCAAGATGTAGAATTTCAAAGAAAAGATCTTGAGAGTTACTTGCAGAATAGCCAGAAGGAACTAGAGAAAATACGGCAGGAAAGGGAGCTAGCATTTGAAGAGGAGAGAGAGAGAGAACGTAATGAATTGTTTTCCCTGAGAGACATTGCTCAGAAAGAAACAGAAGAGTTATTGTCTGAGAGGCATCGATTGGAAAAGGAAAAGGAGGTGGTTTCCCTGAATAGGAAGCAATTGATAGCGGACCATCTTGAAATTCACCAAGATATTGATAAGCTCAACATATTAAGTAAGGAGCTTAAAATTCAGAGAGAACAACTTATCCGGGATAGGGTTCGCTTTTTGACCTTTGTTGATAAGCATAAGAGTTGTGGGAAGTGTGGTGTGTCCATTGAGGAATTTATAGTTCCTGACCTCCAAATACCTGAAGAAATCAGAGAATCACACCCTCTAGCAAAGTTAGATGCCGATTCTCTACAAAACCTCCAAAGAGAATTCGCTGCTTCAGAGTTTGGTTCTTCAGATTCTGGAGGTCGCATGTCTTGGCTCAGAAGATGCAGCAGAAAGATTTTAAATCTATCTCCTATTAAGAAAATTGGACATGTAGTTTCTCCTGTTTCCGTGAAGTTGGCTGCAGATTGTAATGATTTAGAAGCCAAGGAGCCTGGTGTTAATGTTGGCAACGTGAAAAGGTCTGGTATTGCTTATGAACCGCAACAATCTTGTTTAATTGAGAATGAATCATCTGATGTTGAAAGATTTTCATTCAGTGATAACATCAGAGTGGCGGAGGATAGACATGCACACACGTTTGATGATTTTAGCAACTTAGACAGCAAGTTTGAAGAAGCTTCAGAAGCTTCAAAACAACCTTACATGAAGAGAGAGAGGCAGAAACGTGAGAAAGGACTCAAGTCTGGTCATAGAACACGTTCAGTGAAGGCAACTGTTCAAGATGCAAAAAAGTTTCTTGGGGAAACTGCAGGACAGTCAGATCTTAATGTACCTGTACAGAAAAGTGATTCGAATTCTTTAAATAAAGGAACTAGCAATGTTCGGAAGCGGCCATTGCCAGAATCTTCCACAGTTTCTATTAGTGAGCAAGATGGAGATGATAGCGAAGGATATTCTGATAGCATCACAACAGGCAGGCAACGTAAAAGGCGACAAAAAATTGCTTCTGTGCAGGCGCAAGGAGAAAGCCGATATAATCTGAGGCGACACAAGATTGCTGGCAAAGCTAATGCAACTCAGGTTTCAGCAAACCTGACAACAGTGATGGAGAAAGAAAACGAAGGAACTCCTAGTGTTGATGGTGAAAAAGGGGGAAAAATGGACTCTGTGCAGATTACAACAGTCAGAACTGTATATCGTTCTGAGGATAGAGTAGTTCAGTTTGAATCGCAAAGAACGGCTGAAGATAATACTTCCATGGAGAAGCTGGTTACAGTCGATGATTTGCACGATGAAGCGAATGGTTCAGCAGACTATGAAGATGAAGATCAAAGCATACTCGATGATGAAGACGAGTACGATGAAGAGCAGCCTGACGTGGGATCAATTGGAAAGAAGATTTGGACCTTTTTCACAACTTAG 3447 41.89 MFTPQRTGWPAVSLTPRTEPKLAVSNSILVGKGKDVTFTGGPPPPLGSLNDELYKTSTAVDTGDMNDWRKFKKAGLLDAAAMERKDREALLEKASRLQSELFDYQHNLGLLLIEKKDWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKKALAAEKQHVSSLKKALCEVNEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEAKLAEVNRKSSELEIRMHEVEARESVLQTEQISLVTGKEAHQATSHKEREGLRKWRQKLQEWEERLSKSRELLNDKEQKVNENSTTVKQKEKDLEEMKKKIDRSSSVLKEWEDNVNRQLADVEAKEKMEIEQLLDEQRVILQKKKEEFELQLEEKRQSLDSEGSTRIGAINRKYIETNHEKEKLVKQEQALDKKMLRAKEKEGELEQKMKTLKSKDKILKADERKLEVERLQMLDDRESLQSLINEIEEIRTENSQKERQFHEEREKLQVMKEERSEHIRLQCQLMQEIESYRLQNKIVTKEHEDLKQERVKFERDWEALDEKRAEIHNELRDLVEERKKLEILQGTEEERLRSEKNEMLIYMLRELENVKQEKELFASTTRHEQRALSEQAQNKHNQLLQDVEFQRKDLESYLQNSQKELEKIRQERELAFEEERERERNELFSLRDIAQKETEELLSERHRLEKEKEVVSLNRKQLIADHLEIHQDIDKLNILSKELKIQREQLIRDRVRFLTFVDKHKSCGKCGVSIEEFIVPDLQIPEEIRESHPLAKLDADSLQNLQREFAASEFGSSDSGGRMSWLRRCSRKILNLSPIKKIGHVVSPVSVKLAADCNDLEAKEPGVNVGNVKRSGIAYEPQQSCLIENESSDVERFSFSDNIRVAEDRHAHTFDDFSNLDSKFEEASEASKQPYMKRERQKREKGLKSGHRTRSVKATVQDAKKFLGETAGQSDLNVPVQKSDSNSLNKGTSNVRKRPLPESSTVSISEQDGDDSEGYSDSITTGRQRKRRQKIASVQAQGESRYNLRRHKIAGKANATQVSANLTTVMEKENEGTPSVDGEKGGKMDSVQITTVRTVYRSEDRVVQFESQRTAEDNTSMEKLVTVDDLHDEANGSADYEDEDQSILDDEDEYDEEQPDVGSIGKKIWTFFTT 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6644040 6661427 + Lsi09G006120.1 Lsi09g00612 670225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00612 1148 MobiDBLite consensus disorder prediction 1109 1132 - -
Lsi09g00612 1148 Coils Coil 200 241 - -
Lsi09g00612 1148 MobiDBLite consensus disorder prediction 296 316 - -
Lsi09g00612 1148 Coils Coil 80 107 - -
Lsi09g00612 1148 MobiDBLite consensus disorder prediction 1105 1135 - -
Lsi09g00612 1148 Coils Coil 665 685 - -
Lsi09g00612 1148 MobiDBLite consensus disorder prediction 899 917 - -
Lsi09g00612 1148 MobiDBLite consensus disorder prediction 899 932 - -
Lsi09g00612 1148 PANTHER PROTEIN CROWDED NUCLEI 3 1 1148 - -
Lsi09g00612 1148 MobiDBLite consensus disorder prediction 948 997 - -
Lsi09g00612 1148 Coils Coil 263 376 - -
Lsi09g00612 1148 Coils Coil 451 492 - -
Lsi09g00612 1148 Coils Coil 707 727 - -
Lsi09g00612 1148 Coils Coil 147 191 - -
Lsi09g00612 1148 Coils Coil 399 433 - -
Lsi09g00612 1148 Coils Coil 507 562 - -
Lsi09g00612 1148 PANTHER PROTEIN CROWDED NUCLEI 4 1 1148 IPR040418 GO:0005634|GO:0006997
Lsi09g00612 1148 Coils Coil 607 654 - -
Lsi09g00612 1148 MobiDBLite consensus disorder prediction 946 1025 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00612 - - - csv:101222820 1846.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00224 Lsi-Chr3:2818925 Lsi09g00612 Lsi-Chr9:6644040 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00612 Lsi_Chr09 FPKM 6.587986 7.658279 11.980997 11.769258 0.622628 0.648934 0.65569 0.238317 0.291635 0.230333