Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00613 ATGGCCAATTCTTCACACGACTCCTTCTCCTTCTCCCGGAGATACTATTTCAACTTCAACAAAACCAAACACAACAATAACCAAGACGGCAATGAAGACGACCATCAAATCCTAACCTTCAAGCCTCCCAAACACAAACATGCCGTCGTTTCCATCTCCAAGCTCCGCTCCGCCATCGCATTGCTCGGGATCAAGAGCCGATCGTGTCGAGTCGTGGGGACGATATTCGGGCACAGACGAGGGCACGTGCATTTCTCAGTGCAAACGGAGGGAAGCGCAAAGCCAATGTTCTTGGTGGAGCTAGCGATGCCGACGACAGCACTCGTTCGGGAGATGGCATCGGGGGTGGCGAGGATCGCGTTGGAGTGCGAGAGAGGAGAGAAAAGGGAACTGAATGAAGAGGGGATATGGAGAGCGTATTGCAATGGGAAAAAGTATGGAATTGCACATAGGTTCGAGTGTGGAGCAGAAGAATGGAGGATTCTTAGAGCCGTTGGGCCCATAACGGTTGGAGCTGGAGTGTTGCCTGGGAGTGGGGAGGCAGCTGGTGAAGGTGAAGTGATGTTTATGAGAGCTAGTTTTGAGAGGGTTGTGGGTTCAAGGGATTCAGAAGCTTTTTACATGATTAACCCACATGGGGATCTAGATACTTCATGGAGAAGGATTTGA 669 50.67 MANSSHDSFSFSRRYYFNFNKTKHNNNQDGNEDDHQILTFKPPKHKHAVVSISKLRSAIALLGIKSRSCRVVGTIFGHRRGHVHFSVQTEGSAKPMFLVELAMPTTALVREMASGVARIALECERGEKRELNEEGIWRAYCNGKKYGIAHRFECGAEEWRILRAVGPITVGAGVLPGSGEAAGEGEVMFMRASFERVVGSRDSEAFYMINPHGDLDTSWRRI 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6689160 6691128 - Lsi09G006130.1 Lsi09g00613 670226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00613 222 Pfam Protein of unknown function, DUF617 71 214 IPR006460 GO:0010274
Lsi09g00613 222 PANTHER PROTEIN MIZU-KUSSEI 1 24 212 IPR006460 GO:0010274
Lsi09g00613 222 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 71 214 IPR006460 GO:0010274
Lsi09g00613 222 PANTHER BNAC07G49860D PROTEIN 24 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00613 - - - csv:101223057 346.665
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00301 Lsi09g00613 CCT
Lsi04g00301 Lsi09g00613 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00156 Lsi-Chr2:1304562 Lsi09g00613 Lsi-Chr9:6689160 5.58E-61 dispersed
Lsi06g01360 Lsi-Chr6:24171038 Lsi09g00613 Lsi-Chr9:6689160 4.95E-61 dispersed
Lsi09g00613 Lsi-Chr9:6689160 Lsi10g00652 Lsi-Chr10:9083425 1.05E-44 dispersed
Lsi04g00301 Lsi-Chr4:3040826 Lsi09g00613 Lsi-Chr9:6689160 2.57E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g244 . Blo16g01046 . Bda11g01125 Bpe13g01322 . Bma14g01690 . Cmo04g01617 Cmo18g01075 . Cma18g01053 Car04g01596 . Sed14g0510 Cpe09g00264 Cpe01g01753 Bhi07g01383 Tan04g0913 Cmetu10g1393 Lac13g0446 Hepe10g1858 . . Cla05g02341 Cam05g2514 Cec05g2540 Cco05g2581 Clacu05g2508 Cmu05g2370 Cre05g2487 Cone13ag0866 Cone19ag0866 Cone6ag0479 Cone9ag0491 Lsi04g00301 Csa05g02071 Chy10g01106 Cme10g00304 . Blo11g00825 Bda07g01520 Bda11g01125 Bpe11g01682 . . Bma06g00777 . . . . . . . . . Bhi12g00826 . . . . . . Cla01g00565 Cam01g0588 Cec01g0580 Cco01g0604 Clacu01g0583 Cmu01g0554 Cre09g1953 Lsi09g00613 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013965 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00613 Lsi_Chr09 FPKM 8.353541 8.903267 10.310291 10.130619 11.981226 10.798141 11.686509 15.444793 14.372674 16.39583