Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00615 ATGACGGACACTACTGACGATATCGCTGAGGAAATATCCTTCCAGAGCTTCGATGACGACTGTAAATTGCTTGGCAACCTTCTACACGATGTCTTGCAGCGGGAAGTTGGCAGCCAATTCATGGAGAAACTTGAACGAACTCGAGTCCTCGCTCAGAGCGCTTGCAATATGAGGATGGCGGGCATCGAGGATACGGCTGATATGCTTGAGAGGCAGCTTGCATCGGAGTTGTCGGAAATGACTTTAGAGGAAGCCTTCTCTCTGGCTCGTGCATTCAGCCACTCTCTCAATTTGATGGGGATTGCAGAAACCCACCACAGGGTTCGTAAGTCGAGAAATATTGCACCTCTATCAAGATCCTGCGATGAAGTTTTTAATCAGCTAGTGCAGGGCGGAGTTTCTCCTGACGAGCTTTACGACAGTGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACGGCACATCCAACTCAAATAAATCGTCGTACTTTGCAGTACAAACATCTTCGCATTGCACATCTATTGGACTACAATGACCGACCTGACCTTAGTCCTGAAGATCGGGAAATGCTAATTGAAGATCTGGTAAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGACGCCACAAGCCCACACCAGTTGATGAAGCTAGGGCTGGCTTGAACATTGTGGAACAGTCCCTGTGGAAAGCTGTCCCTTATTATTTACGTCGACTCAGCAATGCCTTAAAGAAGCACACTGGAAGGTCGCTTCCTTTGACTTGCACACCAATAAAATTTGGGTCTTGGATGGGAGGCGATAGGGATGGAAATCCAAATGTCACAGCAAAAGTCACACGAGACGTCTCTCTTTTGTCTAGGTGGATGGCTATTGATCTATACATTCGAGAGCTTGATAGCTTGCAATTTGAACTTTCCATGAACCGATGCAGTGATAGATTACACAGACTGGCACATGAAATTCTTGAAAAGGAAACTGTATCTGAAGATCGACACGAGATATGGAATCAGTCTTCGAGCAAAAATGAATTGAAGAATCACGGCCATCAAGCTGCTACACTTCCAAGACAACTTCCACTTAGGGCTGATCTACCTTCATGCACGGATTGCAATGATGGCGAATCCAGGTATTCCAGAGTTGAATTTCCGAGGACTGATCATACATCATCAAATAATGAGGTGAAGCAAGAAGTTACTGTTACAAATACAAGTGCGTCTTTATCAAATGGGAATTCACCTAGTGCAAGTGCATCTCAGTCCAATTCTATTCCTCGTAATCCATCTTTCAACTCGACTCAACTCCTTGCTCAGAGGAAACTGTTTGCAGAATCTCAGATTGGGAGGTCCAGTTTTCAGAAACTTTTAGAACCCAGGCTCCCTCTACGTCCTGGAATTGCACCCTACCGCGTTGTGCTGGGTAGTGTAAAAGACAAGGGTCAGACGGGTTGTCCCGTGAGATTAGTTGAGGTGTATCTTGTAAAAACACGGAGGAGGCTGGAGCTGCTTCTTGAGGATCTTCCTTGTGAACAAGATCCTTCGGATTACTATGAGACTGCAGATCAACTCTTGGAGCCACTGCTTCTATGCTATGAGTCTCTGCAATCATGTGGATCTGTGGTGCTTGCTGATGGTCGATTAGTTGATCTGATTAGAAGAGTTGCTACATTTGGTATGGTATTAATGAAGCTGGATTTACGTCAGGAATCTGGTAGACATGCTGAAACTCTGGACGCCATTACAACGTATTTGGACGTGGGCTCATATAGTGACTGGGATGAAGAAAGGAAGTTGGAATTTTTAACAAGAGAGCTGAAGGGGAAGCGACCACTAGTTCCTCCAACTATTGAGGTTCCTTCTGATGTTAAAGAAGTTTTGGACACCTTTCGTGTTGCTGCTGAGCTAGGGAGTGAATCACTTGGTGCCTATGTGATCTCTATGGCCTCAAATGCAAGTGACGTCCTTGCAGTGGAACTTCTGCAGAAAGATGCACGACTTGCTGTTAGTGGCGAGTTAGGACGACCATGTCCCGGTGGAACGTTGCGGGTGGTTCCTCTGTTTGAAACTGTGGATGACTTGAGGAAAGCAGGATCATCGATCAGGAAACTATTATCTATTGATTGGTATCGAGAGCACATAATAAAGAACCACAATGGACATCAAGAGGTCATGGTAGGTTATTCTGATTCTGGCAAAGATGCTGGGCGCTTCACTGCTGCATGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCATGTAACGAGTATGGTATTAAAGTTACCCTGTTCCACGGGCGTGGAGGGAGCATCGGCCGTGGGGGTGGACCAACGTATCTGGCCATTCAATCTCAGCCTCCAGGTTCTGTAATGGGTACTTTACGATCAACCGAGCAAGGGGAGATGGTGCAGGCCAAGTTTGGGTTGCCTCAGACTGCTGTTAGACAGTTAGAGATATATACCACGGCTGTACTCCTTTCAACCCTGCGTCCACCACTTCCACCTCGAGAAATAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATCAGCTGTCAAAATTACCGGAGCATGGTATATGAAAATCCAGAATTCATTTCTTACTTCAATGAGGCCACTCCTCAGGCAGAGCTTGGCTTCCTTAACATTGGTAGCCGCCCAACAAGAAGAAAGACCTCTGTTGGGATCGGGCATCTTCGAGCCATACCATGGGTTTTTGCTTGGACACAAACTAGATCTGTTCTTCCAGCTTGGCTTGGGGTTGGGGCAGGTTTAAAGGGTGTATGTGAAAAGGGTCACACTGAAGACTTGAAATCAATGTACGAAGAGTGGCCTTTCTTCCAGAGCACCCTAGACCTTATAGAGATGGTTTTAGGTAAAGCCGATACTCACATTGCAAAGCATTATGATGAAGTCCTTGTGTCGGAGAGTAGGCGTGAAATCGGATCTACATTGAGGAAGGAACTAGTAGAGACTGAGAAGTATGTTTTGGTAGTTAGCAGGCATGAGAAACTATCTGAGAACAATCGAAGTTTGAGAAAGCTGATCGAAAGCAGACTCCATTATCTTAATCCTTTGAACCTACTGCAAGTGGAGATATTAAAAAGGCTGAGATGTGATGCAGAGAACAACAAACTAAGAGATGCATTGCTTATTACTATCAATGGTATCGCAGCTGGAATGAGGAACACAGGTTAA 3198 45.31 MTDTTDDIAEEISFQSFDDDCKLLGNLLHDVLQREVGSQFMEKLERTRVLAQSACNMRMAGIEDTADMLERQLASELSEMTLEEAFSLARAFSHSLNLMGIAETHHRVRKSRNIAPLSRSCDEVFNQLVQGGVSPDELYDSVCKQEVEIVLTAHPTQINRRTLQYKHLRIAHLLDYNDRPDLSPEDREMLIEDLVREITSIWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPYYLRRLSNALKKHTGRSLPLTCTPIKFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIRELDSLQFELSMNRCSDRLHRLAHEILEKETVSEDRHEIWNQSSSKNELKNHGHQAATLPRQLPLRADLPSCTDCNDGESRYSRVEFPRTDHTSSNNEVKQEVTVTNTSASLSNGNSPSASASQSNSIPRNPSFNSTQLLAQRKLFAESQIGRSSFQKLLEPRLPLRPGIAPYRVVLGSVKDKGQTGCPVRLVEVYLVKTRRRLELLLEDLPCEQDPSDYYETADQLLEPLLLCYESLQSCGSVVLADGRLVDLIRRVATFGMVLMKLDLRQESGRHAETLDAITTYLDVGSYSDWDEERKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVDDLRKAGSSIRKLLSIDWYREHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLSTLRPPLPPREIKWRNLMEEISKISCQNYRSMVYENPEFISYFNEATPQAELGFLNIGSRPTRRKTSVGIGHLRAIPWVFAWTQTRSVLPAWLGVGAGLKGVCEKGHTEDLKSMYEEWPFFQSTLDLIEMVLGKADTHIAKHYDEVLVSESRREIGSTLRKELVETEKYVLVVSRHEKLSENNRSLRKLIESRLHYLNPLNLLQVEILKRLRCDAENNKLRDALLITINGIAAGMRNTG 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6713585 6728539 + Lsi09G006150.1 Lsi09g00615 670228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00615 1065 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1065 IPR022805 GO:0006099|GO:0008964|GO:0015977
Lsi09g00615 1065 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 723 735 IPR033129 -
Lsi09g00615 1065 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 1065 IPR015813 GO:0003824
Lsi09g00615 1065 MobiDBLite consensus disorder prediction 376 430 - -
Lsi09g00615 1065 Pfam Phosphoenolpyruvate carboxylase 490 1065 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lsi09g00615 1065 Pfam Phosphoenolpyruvate carboxylase 19 337 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lsi09g00615 1065 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 8 1065 - -
Lsi09g00615 1065 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lsi09g00615 1065 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lsi09g00615 1065 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lsi09g00615 1065 MobiDBLite consensus disorder prediction 339 358 - -
Lsi09g00615 1065 Gene3D Phosphoenolpyruvate/pyruvate domain 289 363 - -
Lsi09g00615 1065 Gene3D Phosphoenolpyruvate/pyruvate domain 391 559 - -
Lsi09g00615 1065 Coils Coil 59 79 - -
Lsi09g00615 1065 MobiDBLite consensus disorder prediction 376 392 - -
Lsi09g00615 1065 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Lsi09g00615 1065 MobiDBLite consensus disorder prediction 393 430 - -
Lsi09g00615 1065 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 8 1065 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00615 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - csv:101216256 1951.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00615 Lsi-Chr9:6713585 Lsi11g01572 Lsi-Chr11:24008815 2.13E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00615 Lsi_Chr09 FPKM 3.39521 2.901398 9.415306 5.217892 107.827339 102.021851 100.546165 3.261648 2.716402 1.852718