Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00616 ATGGCAGCTCTAGAAGACCATTACCAAACCAAACAAAACAACAACAATAATAATCCCACTACTCGCTTGAAGCTCTTTGGCTTTGACGTCCAAGAAGATCTTGAAGACGACTCCGCCCCAACTCCCTCCGCCTCCTCCGACTCTGGCGGCGGATTAGGACCCACCTCCGCCGCCGCTCCCTCCTCCGGCGACCGTAAATACGAGTGTCAGTACTGCTACAGAGAGTTCGCTAATTCCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGTCAGCAGCTCAAACGCGCCCAATTACAAGCCTCTCGAAACGCTGCCGTTTTCAGAAATCCCATCGTCTCTGCCTTTGCTCCGCCGCCTCACCTTCTCCCCTCCGCCGCCGTCACTTCCTCCTCTTCTTGGCCGGTTTACATCCCCCGGGCCCCACCTCAATTCCAAGTCTCCCACGGCTGTGTCTTCACTCCCTCCTCCTACGCCGACGCTCCACCGCCGCCGCCGCCGCCTGACTTCTTTACGATGGGGTCTAGGTCGGGTCACGGGATGGTGGATGCTCCGACGTCGCTGAGCCGGTTTTCTAAAGTGGACGGTGGAACCGGGTTCGATGATGGACCGGGTTTGGATTTGCATCTCAGCCTCGCACCGTCGGCGCCATGA 660 58.33 MAALEDHYQTKQNNNNNNPTTRLKLFGFDVQEDLEDDSAPTPSASSDSGGGLGPTSAAAPSSGDRKYECQYCYREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVFRNPIVSAFAPPPHLLPSAAVTSSSSWPVYIPRAPPQFQVSHGCVFTPSSYADAPPPPPPPDFFTMGSRSGHGMVDAPTSLSRFSKVDGGTGFDDGPGLDLHLSLAPSAP 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6751781 6752440 - Lsi09G006160.1 Lsi09g00616 670229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00616 219 SUPERFAMILY beta-beta-alpha zinc fingers 63 94 IPR036236 -
Lsi09g00616 219 Gene3D Classic Zinc Finger 55 112 - -
Lsi09g00616 219 MobiDBLite consensus disorder prediction 1 64 - -
Lsi09g00616 219 Pfam C2H2-type zinc finger 67 92 - -
Lsi09g00616 219 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Lsi09g00616 219 PANTHER ZINC FINGER PROTEIN 5 13 219 IPR044299 GO:0010090
Lsi09g00616 219 PANTHER ZINC FINGER PROTEIN GIS3 13 219 - -
Lsi09g00616 219 MobiDBLite consensus disorder prediction 38 52 - -
Lsi09g00616 219 MobiDBLite consensus disorder prediction 7 24 - -
Lsi09g00616 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00616 - - - csv:105435546 349.362
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00240 Lsi09g00616 CCT
Lsi04g00240 Lsi09g00616 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01753 Lsi-Chr2:23252302 Lsi09g00616 Lsi-Chr9:6751781 4.57E-14 dispersed
Lsi03g01756 Lsi-Chr3:28968035 Lsi09g00616 Lsi-Chr9:6751781 1.05E-13 dispersed
Lsi04g00509 Lsi-Chr4:4739377 Lsi09g00616 Lsi-Chr9:6751781 1.28E-15 dispersed
Lsi09g00616 Lsi-Chr9:6751781 Lsi09g01469 Lsi-Chr9:22692090 1.22E-17 dispersed
Lsi09g01253 Lsi-Chr9:20202819 Lsi09g00616 Lsi-Chr9:6751781 2.45E-08 dispersed
Lsi04g00240 Lsi-Chr4:2436913 Lsi09g00616 Lsi-Chr9:6751781 1.35E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g191 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00792 . . . . Cma15g01429 . . . . Bhi12g00829 . . . Hepe02g2694 . Lcy10g1478 Cla01g00568 Cam01g0592 Cec01g0583 Cco01g0607 Clacu01g0587 Cmu01g0557 Cre09g1950 Lsi09g00616 . . .
Vvi1g331 . . Bda01g02066 . . Bpe10g01021 . . Cmo04g01570 Cmo18g01017 . Cma18g01006 Car04g01552 Car18g00928 Sed06g1904 Cpe09g00314 Cpe01g01336 Bhi07g01302 Tan04g0836 Cmetu09g1765 Lac13g0517 Hepe01g1174 . . Cla05g02284 Cam05g2457 Cec05g2478 Cco05g2521 Clacu05g2452 Cmu05g2313 Cre05g2431 Cone13ag0816 Cone19ag0823 Cone6ag0434 Cone9ag0451 Lsi04g00240 Csa05g02068 Chy10g01163 Cme10g00242 Blo06g01047 . . . . . Bma01g00355 . . Cmo04g02165 Cmo15g00960 Cma04g02070 Cma15g00921 . Car15g00863 Cpe13g00399 . Bhi12g00829 . . . Hepe02g2694 . Lcy10g1478 Cla01g00568 Cam01g0592 Cec01g0583 Cco01g0607 Clacu01g0587 Cmu01g0557 Cre09g1950 Lsi09g00616 . Chy09g00896 Cme09g01429
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001454 3 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 2 2 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25886 PF13912 zf-C2H2_6 1.40E-05 CL0361 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00616 Lsi_Chr09 FPKM 6.566396 6.105199 3.788529 4.277614 5.152585 2.695024 4.935646 1.728163 1.548477 1.995104