Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00618 GGAATTAAAACCAAACTTCCCCTTCTCCCACATCGTCTGCCCTCCGCCACCCTCTCCGACGTAGCCTCACCTCCGATCAAGCGCCATCCGGCCAATTTCCGATCTGGGTATTCGAAAATTTGGCAAAAAATGAAGAGTCAAATTCAGAGTCCGAAGCTAATCCATATCCATCTTAGCTTCTTCAACGTCGTCCCTTACATCCTCCTCTTCACCGCCGGAATCACCGCCGGTGCTTTCCTCACTTTCTATCTCTCCAATTTCTCCATAAGCTTAAACCTCACCCAAATCCCCTCTTCGAGTTTTTTTCCAGTGACCGGTGGCCGGGTGGGGTTGGAAGAGTATTTGAAGCCGCCGGAAGTAATGCACGACATGGAGGACGAGGAGCTTCTGTGGAGATCTTCAATGACGGCGGGAATTAAGAAATTTCCATTCCGGCGGGTTCCAAAGATAGCGTTCATGTTCTTGACGAAAGGGCCTGTGTATTTGGCTCCTCTTTGGGAAGAATTCTTTAAGGGAAATGAAGGGCTTTACTCTGTTTATGTTCATTCTGATCCTTCTTATAATCATTCTTTCCCTGAATCCCCTGTTTTCCATGGCCGGAGAATTCCCAGCAAGAAAGTGGGATGGGGAAAGGTAAACATGATCGAGGCAGAACGTCGCCTATTATCAAACGCACTCCTTGACATTTCAAACGAGCGATTTATTCTCCTTTCAGAAGCTTGTATTCCTCTCTTCAACTTCTCCACAGTCTACTCCTTCCTCATCAACTCCACCATGAAAAGCTTCATCATGAGCTACGACGAACCCGGTAATGTCGGTCGCGGCCGATACAGGAACAAGATGTTCCCACCCATCTCCCTAAAACAATGGCGTAAAGGCTCACAGTGGTTCGAAATGGACCGAGAAACCGCCGTTGCCGTCGTCTCCGACATGAAGTACTTTCCTGTCTTTCAGAATTACTGCAAAGGCCAATGTTACTCCGATGAACATTACTTGCCGACCTTGGTCAATATTTTGGGCTGGAACAGGAATGCCAATCGAAGTTTGACTTGGGTTGATTGGTCAAAGGGTGGCCCACATCCTACGAGATTCTCGTGGTCAGATATAAACGTGGAGCTTTTTCAAAGATTAAGGAATCAAACCCATAAATGTATAAAAACTAAATTGGAAGGAACAGGTGTTTGCTTTTTATTCGCCAGAAAATTTGCTCCAAACACATTGGGGAGGCTGATGAAGATTGCACCAAAGGCCATGCACTTTGGGAGATAG 1269 46.57 GIKTKLPLLPHRLPSATLSDVASPPIKRHPANFRSGYSKIWQKMKSQIQSPKLIHIHLSFFNVVPYILLFTAGITAGAFLTFYLSNFSISLNLTQIPSSSFFPVTGGRVGLEEYLKPPEVMHDMEDEELLWRSSMTAGIKKFPFRRVPKIAFMFLTKGPVYLAPLWEEFFKGNEGLYSVYVHSDPSYNHSFPESPVFHGRRIPSKKVGWGKVNMIEAERRLLSNALLDISNERFILLSEACIPLFNFSTVYSFLINSTMKSFIMSYDEPGNVGRGRYRNKMFPPISLKQWRKGSQWFEMDRETAVAVVSDMKYFPVFQNYCKGQCYSDEHYLPTLVNILGWNRNANRSLTWVDWSKGGPHPTRFSWSDINVELFQRLRNQTHKCIKTKLEGTGVCFLFARKFAPNTLGRLMKIAPKAMHFGR 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6809593 6811662 + Lsi09G006180.1 Lsi09g00618 670231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00618 422 Pfam Core-2/I-Branching enzyme 150 377 IPR003406 GO:0016020|GO:0016757
Lsi09g00618 422 PANTHER CORE-2/I-BRANCHING ENZYME 49 419 - -
Lsi09g00618 422 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 49 419 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00618 - - - csv:101202787 706.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00720 Lsi-Chr5:9816579 Lsi09g00618 Lsi-Chr9:6809593 1.15E-112 dispersed
Lsi07g00551 Lsi-Chr7:5846349 Lsi09g00618 Lsi-Chr9:6809593 1.61E-121 dispersed
Lsi08g01138 Lsi-Chr8:20021757 Lsi09g00618 Lsi-Chr9:6809593 9.24E-50 dispersed
Lsi09g00618 Lsi-Chr9:6809593 Lsi11g00784 Lsi-Chr11:9086284 1.61E-67 dispersed
Lsi09g00618 Lsi-Chr9:6809593 Lsi06g01318 Lsi-Chr6:23759581 1.67E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g340 Blo01g00733 . Bda01g01847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0449 . Csa05g02066 . . . . . . . Bpe02g02024 . . . . Cmo15g00962 . Cma15g00923 . Car15g00865 Cpe13g00397 . Bhi12g00834 . . . . . Lcy10g1475 Cla01g00570 Cam01g0596 Cec01g0585 Cco01g0611 Clacu01g0589 Cmu01g0561 Cre09g1946 Lsi09g00618 . Chy09g00894 Cme09g01427
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002751 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00618 Lsi_Chr09 FPKM 2.170311 2.586886 2.901867 1.916729 7.041906 8.434924 7.657134 3.769596 3.918575 4.322819