Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00619 ATGAGTAGCGGTGGCAGTGGCACTTCTCGAAGCACTAGGGATTTGATCTGCCACGCCGGTGCCGGTGCTGCCGCAGGTTCTATAGCAGCCACGTTCGTTTGCCCTTTAGATGTCATCAAGACAAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTATCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATAGTAGCACTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATTCAGATGGTTGGTTTTGGTGTTCATTGGCAAATGATTTTTCCTTTCCTTTTTTTTACAAATGCAGTTGTTTCTGGACATGCTGTGGTGGGGACGATGGTCATCAACTCTCATTTGGGAAACATATGGTTGCTGCTGCTGGAGCTGGGGCATCTACTGCCATTGCAACAAATCCTTTGTGGGTTGTTAAGACCAGACTCCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATTGTACAGGAAGAAGGAATTCGTGGGCTTTATAGGTTTGTTCTCACCATATATGTGGAAATTGAAGTTTTCAATTGGTATCATCCCTTCATTGGTCGGGATAAGTCATGTTGCGATTCAATTTCCTGCATACGAAAAGCTCAAATCGTATATGGCAGAAAGAGGTACGTAGTTCGTTCCCGACTACAAGAGCAAGGCCAAGCCAGAAATGTTGCTCCTCAATACTCAGGAGTAATGGACTGTATCAAAAAGGTTTTCCGAAAGGAAGGTCTCCCCGGTTTTTATAGAGGCTGTGCGACGAATCTGTTGCGAACAACTCCATCCGCTGTAATAACTTTCACCAGCTATGAAATGATACATAGGTTCCTTCTGCGACTTGTACCTTCAGGTGAGGAGAAATATTCAGAAGCCCAACCGAACTCCAATAGTAATAGCCATGTGAAGCCCCAAAAGGCGATCAGAGACGACTCAAAGGAAGATAGTGATTCCGGCATACAACAATCACAATCCCAACCAAGTAAGCAAACTAGAATTCCTCTGGGGAACAAAGAACACTTAACATCTAGTCATTGA 1146 44.85 MSSGGSGTSRSTRDLICHAGAGAAAGSIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIITSLQDIMRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHSDGWFWCSLANDFSFPFFYKCSCFWTCCGGDDGHQLSFGKHMVAAAGAGASTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIVQEEGIRGLYRFVLTIYVEIEVFNWYHPFIGRDKSCCDSISCIRKAQIVYGRKRYVVRSRLQEQGQARNVAPQYSGVMDCIKKVFRKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLRLVPSGEEKYSEAQPNSNSNSHVKPQKAIRDDSKEDSDSGIQQSQSQPSKQTRIPLGNKEHLTSSH 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6817617 6822437 + Lsi09G006190.1 Lsi09g00619 670232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00619 381 SUPERFAMILY Mitochondrial carrier 13 309 IPR023395 -
Lsi09g00619 381 Gene3D Mitochondrial carrier domain 3 203 IPR023395 -
Lsi09g00619 381 Gene3D Mitochondrial carrier domain 247 340 IPR023395 -
Lsi09g00619 381 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 224 324 IPR044712 GO:0006862|GO:0055085
Lsi09g00619 381 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 132 204 IPR044712 GO:0006862|GO:0055085
Lsi09g00619 381 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 9 106 IPR044712 GO:0006862|GO:0055085
Lsi09g00619 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 140 224 IPR018108 -
Lsi09g00619 381 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 132 204 - -
Lsi09g00619 381 Pfam Mitochondrial carrier protein 139 203 IPR018108 -
Lsi09g00619 381 Pfam Mitochondrial carrier protein 248 315 IPR018108 -
Lsi09g00619 381 Pfam Mitochondrial carrier protein 18 105 IPR018108 -
Lsi09g00619 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 313 IPR018108 -
Lsi09g00619 381 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 224 324 - -
Lsi09g00619 381 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 9 106 - -
Lsi09g00619 381 MobiDBLite consensus disorder prediction 325 339 - -
Lsi09g00619 381 MobiDBLite consensus disorder prediction 354 381 - -
Lsi09g00619 381 MobiDBLite consensus disorder prediction 325 381 - -
Lsi09g00619 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00619 K15115 SLC25A32, MFT; solute carrier family 25 (mitochondrial folate transporter), member 32 - csv:101216902 518.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02438 Lsi-Chr2:30946157 Lsi09g00619 Lsi-Chr9:6817617 1.06E-85 dispersed
Lsi09g00619 Lsi-Chr9:6817617 Lsi05g02083 Lsi-Chr5:27707662 2.50E-16 dispersed
Lsi09g00619 Lsi-Chr9:6817617 Lsi08g01194 Lsi-Chr8:20513216 5.93E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g346 . . Bda01g02021 Bda11g00163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0430 Cone9ag0448 . Csa05g02065 . . . . . Bda11g00163 . Bpe02g02209 . . . . Cmo15g00963 . Cma15g00924 . Car15g00866 Cpe13g00396 . Bhi12g00835 . . . Hepe02g2690 . Lcy10g1474 Cla01g00571 Cam01g0597 Cec01g0586 Cco01g0612 Clacu01g0590 Cmu01g0562 Cre09g1945 Lsi09g00619 . Chy09g00893 Cme09g01426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002161 2 2 0 1 2 2 3 2 2 2 2 2 2 2 2 3 2 4 2 2 2 2 2 2 2 2 2 4 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00619 Lsi_Chr09 FPKM 15.808001 18.066801 11.879429 13.216453 8.047248 7.363214 7.693073 8.337566 6.64276 5.643511