Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00622 ATGTTAGGTGCAGGCTTGCAGTTTGCTCGTGGTTGTGGTGATGATAGGTTTTACAATCCGACGAAAGCTCGTAGGGCGCATCAGGGCCGTCAAAATGAACAGCTCCGGAGAGCTCAGAGCGACGTTTCTGCTGGTCAATCCCCTCTTGTTAAACCGAGCGCGGTATCCTCGGTGATTAGAGAAACGGAATACGGCGATGGGTGTGAAGAGCTCCCTAAATCCATTGCGATGTCGGCTTTTGAGCCAGTGGTGTCGTCGTTGAGTAATCTCGAGCGGTTCTTGCAGTCCATCGCGCCATCTGTACCTGCACAGTACCTCTCAAAGACAACGACGAAGGGTTGGAGAACCTGCGACGTGGAATTTCAACCATACTTTGTCCTAGGTGATTTGTGGGAGTCTTTTAAGGAATGGAGTGCTTATGGCGCAGGTGTGCCTCTTGTATTAAACGACAGTGACAGTGTTGTCCAATATTATGTACCATATTTATCTGGTATACAGATATATGGTGAATCCTTGAAGTCCTCTGCAAAGTCAAGAATGGTTATTGAACTGTTCAAGGATTTTTCTTGGTCAAAAGAACTATTGGAGTTGATAGCTAATATTTGGTTCAGCCATGTTGTAATCGGTAAGCAACCAGGTGAGGACAGTGATAGTGACTTCAGAGATTCTAGTAGTGATGGTAGTAGTGATTCAGAACCTGAACGAGCACTAAAATACATGGGGAAGCAACTCAGCCATCACCATTTATTTTCTGAGCTTTCTCATAGAATGGATAGTATATCTTTTCGGGACCAGCTAATTGGACTTCAAGAAGACTGTTCTAGTGACGAGGCTGAATCTCTCAATTCTCAAGGCCAGCTACTATTTGAGCATCTTGAACGTGATTTGCCTTATAGTCGCGAACCTTTGGCAGATAAGGCAAATCTTGCTTTTCAGTTCCCTGAGCTCAAGACATTACGAAGTTGTGATCTATTGCCTTCCAGCTGGTTTTCTGTGGCATGGTATCCAATTTACAGGATTCCAACTGGACCAACATTAAGGGATCTGGATGCCTGCTTCCTCACCTTTCATTATTTGTCTTCGCCAATGGGAGGGGCACGTAGTGTTCAAGGTCCTGTAGTAACGTATCCTAGTGAGATAGATGGTATCCCTAAGATGTCCCTACCAGTTTTTGGTCTAGCTTCATACAAGTTTAGAGGGTCTTTATGGACTCCAAATGGTGGATACGAGTGGCAATTGGCAAATTCACTTTTACAGGATGCTGAGGATTGGTTAAGAGAACGTCAAGTAAATCACCCTGACTTCATCTTCTTCAGCCGAAGGTGA 1326 44.8 MLGAGLQFARGCGDDRFYNPTKARRAHQGRQNEQLRRAQSDVSAGQSPLVKPSAVSSVIRETEYGDGCEELPKSIAMSAFEPVVSSLSNLERFLQSIAPSVPAQYLSKTTTKGWRTCDVEFQPYFVLGDLWESFKEWSAYGAGVPLVLNDSDSVVQYYVPYLSGIQIYGESLKSSAKSRMVIELFKDFSWSKELLELIANIWFSHVVIGKQPGEDSDSDFRDSSSDGSSDSEPERALKYMGKQLSHHHLFSELSHRMDSISFRDQLIGLQEDCSSDEAESLNSQGQLLFEHLERDLPYSREPLADKANLAFQFPELKTLRSCDLLPSSWFSVAWYPIYRIPTGPTLRDLDACFLTFHYLSSPMGGARSVQGPVVTYPSEIDGIPKMSLPVFGLASYKFRGSLWTPNGGYEWQLANSLLQDAEDWLRERQVNHPDFIFFSRR 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6862254 6866567 + Lsi09G006220.1 Lsi09g00622 670235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00622 441 MobiDBLite consensus disorder prediction 19 34 - -
Lsi09g00622 441 PANTHER DUF789 FAMILY PROTEIN 210 439 - -
Lsi09g00622 441 PANTHER DUF789 FAMILY PROTEIN 1 183 - -
Lsi09g00622 441 MobiDBLite consensus disorder prediction 19 48 - -
Lsi09g00622 441 Pfam Protein of unknown function (DUF789) 88 438 IPR008507 -
Lsi09g00622 441 PANTHER T15D22.8 210 439 - -
Lsi09g00622 441 PANTHER T15D22.8 1 183 - -
Lsi09g00622 441 MobiDBLite consensus disorder prediction 214 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00622 - - - csv:101217142 727.243
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00229 Lsi09g00622 CCT
Lsi04g00229 Lsi09g00622 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00276 Lsi-Chr2:2340063 Lsi09g00622 Lsi-Chr9:6862254 4.79E-13 dispersed
Lsi02g00290 Lsi-Chr2:2480434 Lsi09g00622 Lsi-Chr9:6862254 2.64E-47 dispersed
Lsi05g01568 Lsi-Chr5:23443911 Lsi09g00622 Lsi-Chr9:6862254 1.76E-53 dispersed
Lsi06g01316 Lsi-Chr6:23739356 Lsi09g00622 Lsi-Chr9:6862254 2.57E-132 dispersed
Lsi09g00622 Lsi-Chr9:6862254 Lsi10g00877 Lsi-Chr10:13043899 8.35E-22 dispersed
Lsi11g01538 Lsi-Chr11:23712573 Lsi09g00622 Lsi-Chr9:6862254 5.30E-08 transposed
Lsi04g00229 Lsi-Chr4:2352010 Lsi09g00622 Lsi-Chr9:6862254 1.69E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g349 Blo01g00734 . Bda01g01846 . . . . . . Cmo18g01009 . Cma18g01000 Car04g01546 Car18g00922 Sed06g1952 Cpe09g00319 . Bhi07g01290 Tan04g0820 Cmetu10g1408 Lac13g0527 Hepe01g1167 . . Cla05g02278 Cam05g2450 Cec05g2472 Cco05g2515 Clacu05g2445 Cmu05g2307 Cre05g2425 Cone13ag0805 Cone19ag0810 . . Lsi04g00229 Csa05g02062 Chy10g01171 Cme10g00233 . . . . . Bpe02g02023 Bma01g00442 . . Cmo04g02172 Cmo15g00966 Cma04g02077 Cma15g00927 Car04g02014 Car15g00870 Cpe13g00393 Cpe04g01392 Bhi12g00839 . . . . . . Cla01g00574 Cam01g0600 Cec01g0591 Cco01g0615 Clacu01g0593 Cmu01g0566 Cre09g1941 Lsi09g00622 . Chy09g00890 Cme09g01423
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001555 1 3 2 1 1 2 4 2 2 2 2 2 3 2 3 4 2 2 4 2 2 2 2 2 2 2 2 4 6 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00622 Lsi_Chr09 FPKM 2.629482 4.053169 4.061873 3.036191 5.436325 5.559127 5.088286 5.884248 5.557249 5.570712