Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00625 ATGCTTGTGGGTCTGTTTCTCATTCTTTTGTGTTGTTCTGATTGTCTTCTTCTTGTGAGTTCTTTGAATGATGAAGGGTTTGTGCTTTTGTCACTAAAGCAGTCCATTACTGTAGACCCAGATGGGGCTTTCAGCAATTGGGATTCTTCTGATGAAACCCCTTGTTCTTGGAATGGAATTGGTTGTGTAAAGGAAATTGTTGTTTCTGTTACCATTCCTAAAAGGAATTTGTATGGATTTCTTCCTTCTGCTCTTGGGGCTCTTTCTGGGCTTCGCCATTTGAATTTAAGGAACAATAGGCTTTATGGGACCTTGCCTTTTCAGCTCTTCTCTGCTCAAGCTCTGCAGAGCTTGGTTCTTTATGGGAATTCCTTTTCTGGGTCTGTTCCAAATGGGATTGGGAAGCTTAAATACCTTCAAACTTTGGATTTATCTCAAAATTTCTTTAATGGGTCATTACCCACTTCAATTATACAATGCAAGAGACTTAAAACCCTTGATGTTAGTCAGAATAACTTCACTGGTTCACTGCCACATGGGTTTGGAACTAGTTTTAGTTCTTTGGAGAAACTGGATCTTTCATTTAACACATTTGATGGTTCCCTTCCTAGTGATTTGGGGAATTTGTCTAGCTTACAGAGCACTTTTGACTTGTCTCATAATCATTTTTCTGGTTCAATTCCAGCTAGCCTTGGAAACCTACCTGAAAAGGTTTACATTGATCTTAGCCATAACAATTTGAGTGGAACTCTGAGTGCAAGCTCACCGTCCTTGCTTCCATTTCTCCCAGACGATCATTCGCCCGGAATTTCTGGTGACAATGCTGAGAAAACCAGGGGATTGACTAAGAGTGCTGTGATTGCAATAGTACTTGGTGATGTGATTGGCATATGTCTAGTTGGGTTATTGTTCTCATATTGTTATTCTAGAGCGTGTAGTCCAAGGAGCAAAGACGAGATCGGGCGTAGTTCCGATAAGGGGAAAGGAAGAAATGAGTGTTTATGCTTCAGGAAGGATGAATTTGAGTCGGTTTCACAAAATGTGGAGCAGTATGATCTTGTTCCATTAGATGCACAAGTTGCATTTGATCTTGATGAACTTCTCAAGGCATCAGCTTTTGTTATTGGCAAAAGTGGGATTGGTATAGTGTACAAAGTGGTGCTTGAAGATGGAGTTACGTTGGCCGTGCGACGATTGGGCGAAGGCGGTTCACAAAGGTTCAAAGAATTTCAAACAGAAGTAGAAGCAATAGCAAAGCTAAGGCATTCCAATCTTGTCACTCTTAGAGCTTATTACTGGTCTGTTGATGAGAAGCTGCTCATTTATGATTTCATACCCAATGGAAACCTTGCCACTGCCATTCATGGAAAACCAGGAATGGCATCTTTCACGCCGTTATCCTGGTCTGCGAGGTTAAAGATCATGGAAGGAATTGCTAAAGGAATCGTCTATCTCCATGAATTCAGCCCCAAGAAGTATGTTCATGGAGATTTGAAACCCAACAACATACTTCTCAGTCAGGACATGGAAGCCAAAATTTCTGACTTCGGCCTTGCTCGACTTGCGAATATTGCAGGAGGAACCCCAACCTCACAATCAAGTCGAGTGGCGTCTGAGAAACCGTTAGATCCCAAACAACCGAAAACAGTAACATCCGAAATCATTTGCAGTTCATCTTCCAACACAGGAACTTGTTATCAGGCCCCTGAATCACTGAAAGTTTTAAAACCATCCCAAAAATGGGATGTTTACTCATATGGTGTGATCTTACTTGAAATGATCACTGGAAGATTCCCAGTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTCCATTGGATTCAACTCTGCATTGAAGAACAAAAGCCTCTTTCAGAAGTCATAGATCCACATCTAGTTCAAGATGCAGATAAAGAAGAAGAGTTCATCTCTGTACTCAAAATTGCTATGTCTTGTGTTCATGGAAGCCCTGAAAGGAGACCTACCATGAAACACGTCTCCGACGCCCTCGAAAGGCTATCGTCTTCATCAACGTCGAGGAATTAA 2049 41.53 MLVGLFLILLCCSDCLLLVSSLNDEGFVLLSLKQSITVDPDGAFSNWDSSDETPCSWNGIGCVKEIVVSVTIPKRNLYGFLPSALGALSGLRHLNLRNNRLYGTLPFQLFSAQALQSLVLYGNSFSGSVPNGIGKLKYLQTLDLSQNFFNGSLPTSIIQCKRLKTLDVSQNNFTGSLPHGFGTSFSSLEKLDLSFNTFDGSLPSDLGNLSSLQSTFDLSHNHFSGSIPASLGNLPEKVYIDLSHNNLSGTLSASSPSLLPFLPDDHSPGISGDNAEKTRGLTKSAVIAIVLGDVIGICLVGLLFSYCYSRACSPRSKDEIGRSSDKGKGRNECLCFRKDEFESVSQNVEQYDLVPLDAQVAFDLDELLKASAFVIGKSGIGIVYKVVLEDGVTLAVRRLGEGGSQRFKEFQTEVEAIAKLRHSNLVTLRAYYWSVDEKLLIYDFIPNGNLATAIHGKPGMASFTPLSWSARLKIMEGIAKGIVYLHEFSPKKYVHGDLKPNNILLSQDMEAKISDFGLARLANIAGGTPTSQSSRVASEKPLDPKQPKTVTSEIICSSSSNTGTCYQAPESLKVLKPSQKWDVYSYGVILLEMITGRFPVIQVSSSSEMDLVHWIQLCIEEQKPLSEVIDPHLVQDADKEEEFISVLKIAMSCVHGSPERRPTMKHVSDALERLSSSSTSRN 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6888963 6891500 + Lsi09G006250.1 Lsi09g00625 670238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00625 682 MobiDBLite consensus disorder prediction 528 550 - -
Lsi09g00625 682 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 253 677 - -
Lsi09g00625 682 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 6 251 - -
Lsi09g00625 682 SUPERFAMILY L domain-like 23 254 - -
Lsi09g00625 682 Gene3D Phosphorylase Kinase; domain 1 339 444 - -
Lsi09g00625 682 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Lsi09g00625 682 Gene3D Ribonuclease Inhibitor 182 259 IPR032675 -
Lsi09g00625 682 CDD STKc_IRAK 375 674 - -
Lsi09g00625 682 Gene3D Transferase(Phosphotransferase) domain 1 445 682 - -
Lsi09g00625 682 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Lsi09g00625 682 SMART serkin_6 373 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00625 682 ProSiteProfiles Protein kinase domain profile. 369 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00625 682 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 253 677 - -
Lsi09g00625 682 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 251 - -
Lsi09g00625 682 SUPERFAMILY Protein kinase-like (PK-like) 374 671 IPR011009 -
Lsi09g00625 682 MobiDBLite consensus disorder prediction 657 682 - -
Lsi09g00625 682 Pfam Protein kinase domain 375 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00625 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g00224 Lsi09g00625 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00425 Lsi-Chr3:4811829 Lsi09g00625 Lsi-Chr9:6888963 0 dispersed
Lsi04g00668 Lsi-Chr4:6110513 Lsi09g00625 Lsi-Chr9:6888963 0 dispersed
Lsi09g00625 Lsi-Chr9:6888963 Lsi10g00183 Lsi-Chr10:3040323 2.78E-130 dispersed
Lsi04g00224 Lsi-Chr4:2329328 Lsi09g00625 Lsi-Chr9:6888963 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83889 PF00069 Pkinase 1.60E-34 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00625 - - csv:101203259 1203.35