Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00631 ATGTCAAAAGCGAACGAGAGCTTCGAGTTATTTTATTTTATTTTTCTCTCTGGTTTTAGCTCTGTTTTCCCTCCATTTCCGACTCCCCCAAATATTCTTCCTATAAAACCACTTCATCTTCTCCATTCCTCAACTCTCTATTTCTCTCTTTCTCTCTGCGTGTTCTTTGCCGATTCAGTCTCCGTCTATCTCTGTTTTGTTTTTCCTGTTTTGGTGGAACTGATGGAAAGAAATCGAGAACTGTCTGTTGATCTAGAAATGCACAAAAGCACCACTTCTGCTTCGAATACTATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTCCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAATCTCCTCTTCAAAATCGATAAACAACCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGCCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCACCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTCTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCGAAGAGCATCTCCGTGAGGTCCAATGGATACTTGAAGATGGCACAAGCCGGCACCTGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCTGTCAAAGTTACGAGAGATTATAGCTCTGTTTGTGATCAATTGCTTTATGAAGAAGAAAGTCTCTGTCAATTCTTCCTTATTGTAATTACTCGTTTACCTTTTCCTTTATCCTTTTCTAAACCCAGTATATATTGGTCAAGTGTAGCAGTCAAGTTTTTTCTTTTTGTAGTTTATTTTTCAGTACTTAATGTAGCTCTACTGACTCCCATAGGGTCGATTAAATTTGTATTAGGCATTATTCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAACTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACTGGCAGCTGCCCGTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTGTGCCGGATGGTCCTCGCCGGAGTCGTCTGTCCTTACGGTCACCGCTGCCACTTTCGCCATGCACTAACTGACCAGGAAAGGCTCATGGGGACACTCAAGCCCACCTGCCGGACCACCACCCCTAAGCTCGACAGGTGA 1536 47.46 MSKANESFELFYFIFLSGFSSVFPPFPTPPNILPIKPLHLLHSSTLYFSLSLCVFFADSVSVYLCFVFPVLVELMERNRELSVDLEMHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSISSSKSINNHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGTSDQAPPFNFVEGFRGLSLSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTCQGGKVRASSRPRTASPVKVTRDYSSVCDQLLYEEESLCQFFLIVITRLPFPLSFSKPSIYWSSVAVKFFLFVVYFSVLNVALLTPIGSIKFVLGIIQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6929308 6933135 + Lsi09G006310.1 Lsi09g00631 670244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00631 511 Gene3D - 457 493 - -
Lsi09g00631 511 Gene3D - 417 456 - -
Lsi09g00631 511 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 400 500 - -
Lsi09g00631 511 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 129 323 - -
Lsi09g00631 511 SUPERFAMILY CCCH zinc finger 457 491 IPR036855 GO:0046872
Lsi09g00631 511 Coils Coil 186 206 - -
Lsi09g00631 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 424 449 IPR000571 GO:0046872
Lsi09g00631 511 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Lsi09g00631 511 PANTHER CCCH ZINC FINGER/TIS11-RELATED 400 500 IPR045877 GO:0003729
Lsi09g00631 511 SUPERFAMILY CCCH zinc finger 420 455 IPR036855 GO:0046872
Lsi09g00631 511 ProSiteProfiles Zinc finger C3H1-type profile. 423 451 IPR000571 GO:0046872
Lsi09g00631 511 SMART c3hfinal6 423 450 IPR000571 GO:0046872
Lsi09g00631 511 SMART c3hfinal6 461 488 IPR000571 GO:0046872
Lsi09g00631 511 PANTHER CCCH ZINC FINGER/TIS11-RELATED 129 323 IPR045877 GO:0003729
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00631 K18753 ZFP36L; butyrate response factor - csv:101203274 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01834 Lsi-Chr2:24134558 Lsi09g00631 Lsi-Chr9:6929308 1.29E-07 dispersed
Lsi03g00416 Lsi-Chr3:4752671 Lsi09g00631 Lsi-Chr9:6929308 3.90E-10 dispersed
Lsi09g00631 Lsi-Chr9:6929308 Lsi11g00300 Lsi-Chr11:3098106 5.17E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25888 PF00642 zf-CCCH 8.60E-12 CL0537 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00631 Lsi_Chr09 FPKM 12.890357 13.723288 7.045403 6.049007 12.033032 13.601956 11.828029 4.710083 5.246924 4.917663