Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00633 ATGTCTCTGGAAGCTTCGCTGGAACGACGAAAGCAGCCCCAAGCTCCTGGGACTGGCAATGGAAATGGAGTCGTCTCGCCCACCGCACAGTCTCTCTCAACCCACAGGCTTCGTCTCCAACCCAAGGAAGATCACAAGTCGGAGAGCTATGAAGACCTACAATTAGAATTCAGCCCGGTCCTCTTCAGCATGCTGGAAAGGCACTTGCCTCCGAGCATGCTCAATGTGGCACGCGACCTTAAGCTTCAGTACATGAGGGACATTCTACTCCGATATGCTCCTGAGGGCGAACGCAACCGACCATTACACAGGGAGCTTTACAGTATGCATGCTGCAAACTTCTTTGTTCCCTCGTTTCTCAAAGCTATCAATGAGAATTCAGAGGAGAGCTTTAGACGCATCATGTCTGAACCCTCTCCAGGAATTTATAAATTTGAAATGCTTCAACCACAATTTTGTGAAAAGCTGTTATCTGAGGTGGAAAGCTTTGAAAGATGGGTTCACGAGACGAAATTCAGAATCATGCGACCAAACACAATGAACAAATACGGTGCTGTTCTTGATGACTTTGGTTTAGAAACCATGCTTGATAAGTTGATGGATGATTTTATACGTCCTATATCCAGAGTTTTCTTTCCAGAAGTTGGAGGAGCCACACTGGACTCTCATCATGGTTTTGTTGTAGAATATGGAATTGATAGAGATGTGGAACTTGGTTTTCATGTGGATGATTCGGAAGTCACATTGAACGTTTGCTTGGGTAAACAATTTTCTGGTGGTGAACTGTTCTTTCGTGGCATCCGATGTGACAAACATGTTAATACAGAGACCCAATCAGAGGAAATCTTTGACTATCTTCATGTTCCTGGGCATGCGGTTCTTCATCGTGGTCGTCATCGGCATGGTGCTAGAGCTACAACATCTGGGCGTCGGGTCAACTTACTTTTGTGGTGCAGAAGGTGTAGCTGTACATTTGAAATGTTGTTGATAGTGCAGCAATTTTATTACACTGCTCATCAAGTCGGGGACGGCAATGAGATTGGATTAATGTGGCGAAACAAATTTTGGTATTGA 1074 44.88 MSLEASLERRKQPQAPGTGNGNGVVSPTAQSLSTHRLRLQPKEDHKSESYEDLQLEFSPVLFSMLERHLPPSMLNVARDLKLQYMRDILLRYAPEGERNRPLHRELYSMHAANFFVPSFLKAINENSEESFRRIMSEPSPGIYKFEMLQPQFCEKLLSEVESFERWVHETKFRIMRPNTMNKYGAVLDDFGLETMLDKLMDDFIRPISRVFFPEVGGATLDSHHGFVVEYGIDRDVELGFHVDDSEVTLNVCLGKQFSGGELFFRGIRCDKHVNTETQSEEIFDYLHVPGHAVLHRGRHRHGARATTSGRRVNLLLWCRRCSCTFEMLLIVQQFYYTAHQVGDGNEIGLMWRNKFWY 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6987036 6996655 - Lsi09G006330.1 Lsi09g00633 670246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00633 357 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 320 - -
Lsi09g00633 357 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 18 320 - -
Lsi09g00633 357 MobiDBLite consensus disorder prediction 13 33 - -
Lsi09g00633 357 SMART p4hc 140 319 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lsi09g00633 357 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 320 IPR005123 -
Lsi09g00633 357 MobiDBLite consensus disorder prediction 1 33 - -
Lsi09g00633 357 Gene3D q2cbj1_9rhob like domain 142 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00633 - - - csv:101218320 625.165
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g377 . Blo16g00721 . Bda11g00153 Bpe13g01046 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0795 Cone19ag0800 . . . Csa05g02051 . . . . . Bda11g00153 . . . Bma06g01094 . Cmo04g02184 Cmo15g00973 Cma04g02083 Cma15g00933 Car04g02022 Car15g00877 . . Bhi12g00858 . . . Hepe02g2684 . Lcy10g1462 Cla01g00584 Cam01g0610 Cec01g0601 Cco01g0626 Clacu01g0602 Cmu01g0575 Cre09g1930 Lsi09g00633 . Chy09g00881 Cme09g01415
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006881 2 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00633 Lsi_Chr09 FPKM 6.790055 5.489575 0.967224 0.710655 8.565606 6.860606 6.678031 0.671505 0.438835 0.332582