Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00636 ATGGCCTCTTTCTCTTGCCCTCTTCCTTATGTTGTTAGATGCTCCACTGCCAAAGAAGGTAGTGATTCTAACAAGCAGAGGTATGTTAAAGTGAATGGGGCTATTATTGGGTCCATTTCTGAAGCTGATTTGTTGAGCCAATCGGTTAGAGCTTCCAGGGCTCTCATCCCTTCTGTGGCGGAAAATGGGTGTTTTGTTAAAGAAGATGTTCGTCAGAAAATTCCCACGAAGAAGCAGCTGGTTGATCCTCATCGGCAAGGCCTGATCATTGAAGGAGGTGTTGGGTATAGACAAACTGTTGTAATCAGATCGTATGAAGTTGGTCCTGATAAGACTGCAACTGTGGAGAGCGTAATGAATCTTCTGCAGGAAACAGCACTTAATCATGTTTGGATGTCTGGGCTTCTCAGCAATGGTTTTGGGGCCACCCATGGCATGATGAGGAACAATCTTATCTGGGTCGTTTCGCGAATGCTCGTCGAAGTAGACCACTATCCGATATGGGGTGAGATTGTTGAAATCGATACATGGGTAGGGGCGTCGGGTAAAAATGGAATGAGAAGAGACTGGCTAATTAGAAGTCAAGCCACAGGTCATGTTTATGCTAGAGGAACAAGCACGTGGGTGATGATGAACCAGCATACAAGACGACTCTCCAAAATGCCAGAAGAGGTAAGGGCAGAGATTTCACCATGGTTTATAGAAAAGCATGCAATCAAAGAAGATGCCCCCGAGAAAATATCCAAGTTAGATAACAATGCTAAGTACGTGAACTCTGACTTGAAGACGATACCCGACCATGTTTTGGAGTCTCATCAACTTTCTAGTATTGTGTTAGAGTATAGAAGGGAATGCGGAAGCTCTGATATAGTTCAATCACTATGTGAGCCAGAGGAAGATGGAATCCTTAGAGATGTGGACATGATAGAAGACAGTGAAAGTCTACTAAATGGGTTTTCGTTGGCATCTGAGATTCTCAAAGGTGGTGGGCTCTTGGGATCTTTTGACAAAGGAAAACTGAGTCTTGTTGTTCTGCTTCACAAGGGAGTTAATCAGATGGAGCTGCTCCTGCAAATGCAGAAGTAA 1086 44.11 MASFSCPLPYVVRCSTAKEGSDSNKQRYVKVNGAIIGSISEADLLSQSVRASRALIPSVAENGCFVKEDVRQKIPTKKQLVDPHRQGLIIEGGVGYRQTVVIRSYEVGPDKTATVESVMNLLQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMLVEVDHYPIWGEIVEIDTWVGASGKNGMRRDWLIRSQATGHVYARGTSTWVMMNQHTRRLSKMPEEVRAEISPWFIEKHAIKEDAPEKISKLDNNAKYVNSDLKTIPDHVLESHQLSSIVLEYRRECGSSDIVQSLCEPEEDGILRDVDMIEDSESLLNGFSLASEILKGGGLLGSFDKGKLSLVVLLHKGVNQMELLLQMQK 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7043308 7046485 - Lsi09G006360.1 Lsi09g00636 670249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00636 361 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 1 347 - -
Lsi09g00636 361 Gene3D Hotdog Thioesterase 89 317 - -
Lsi09g00636 361 CDD 4HBT 96 212 - -
Lsi09g00636 361 Pfam Acyl-ACP thioesterase 95 299 IPR002864 GO:0006633|GO:0016790
Lsi09g00636 361 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 95 242 IPR029069 -
Lsi09g00636 361 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 1 347 IPR045023 GO:0006633|GO:0016297
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00636 - - - csv:101205853 624.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00516 Lsi-Chr2:4424845 Lsi09g00636 Lsi-Chr9:7043308 6.67E-49 dispersed
Lsi02g02101 Lsi-Chr2:27209823 Lsi09g00636 Lsi-Chr9:7043308 6.68E-57 dispersed
Lsi02g02762 Lsi-Chr2:33886687 Lsi09g00636 Lsi-Chr9:7043308 3.34E-07 dispersed
Lsi09g00636 Lsi-Chr9:7043308 Lsi11g00282 Lsi-Chr11:2868454 1.60E-33 dispersed
Lsi09g00636 Lsi-Chr9:7043308 Lsi06g00906 Lsi-Chr6:18707740 4.63E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008529 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 3 1 2 0 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00636 Lsi_Chr09 FPKM 3.776952 4.453365 1.338416 1.053389 1.402233 2.634116 1.953815 0.0 0.0 0.0