Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00637 ATGAGTGCTGTCAATCTCACGAACGTCACGGTCTTGGATAACCCCGCCGCGTTTCTGAATCCATTTCAGTTCGAGATCTCATACGAGTGCTTGACTCCGCTTAAAGACGATCTGGAATGGAAACTGACCTACGTCGGATCTGCCGAGGATGAAACCTATGACCAACTTTTGGAGAGTGTGCTCGTTGGACCTGTTAATGTTGGCAATTATCGTTTTGTTCTTCAGGCAGACCCTCCAGATCCCTCAAAAATCCGGGAGGAGGACATCACCGGGGTGACAGTACTGTTATTAACATGTTCATACATGGGACAAGAATTTGTAAGAGTAGGATATTATGTGAACAACGATTATGATGATGAACAGCTCCGTGAAGAACCTCCCCCAAAAGTTCTGATCGATAGGATCCAAAGAAACATTCTAGCTGACAAGCCCAGAGTCACAAAGTTCCCAATCAATTTTCATCCAGAGAACTCTGAACATGGGGCAGAGCAACAACCATCTTCACCCCACCACTCAGCTGAGGCCCTTAACAATGAAGAAGAAGAAGAATTACAACCACCACCATCACCATCACCATCAGCAGCAGATGAGCCATCTTTAGATCAGGAAGCCATTGATTCTGGACCTCAGCCCTCAGTCACGGCATGA 648 46.45 MSAVNLTNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLTYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDITGVTVLLLTCSYMGQEFVRVGYYVNNDYDDEQLREEPPPKVLIDRIQRNILADKPRVTKFPINFHPENSEHGAEQQPSSPHHSAEALNNEEEEELQPPPSPSPSAADEPSLDQEAIDSGPQPSVTA 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7047892 7050834 - Lsi09G006370.1 Lsi09g00637 670250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00637 215 PANTHER HISTONE CHAPERONE ASF1B-RELATED 1 187 - -
Lsi09g00637 215 Pfam ASF1 like histone chaperone 1 153 IPR006818 GO:0005634|GO:0006325
Lsi09g00637 215 Gene3D - 1 157 IPR036747 GO:0005634|GO:0006325
Lsi09g00637 215 MobiDBLite consensus disorder prediction 149 215 - -
Lsi09g00637 215 MobiDBLite consensus disorder prediction 158 173 - -
Lsi09g00637 215 SUPERFAMILY ASF1-like 1 153 IPR036747 GO:0005634|GO:0006325
Lsi09g00637 215 PANTHER ANTI-SILENCING PROTEIN 1 1 187 IPR006818 GO:0005634|GO:0006325
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00637 K10753 ASF1; histone chaperone ASF1 - csv:101205383 382.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00415 Lsi-Chr3:4732329 Lsi09g00637 Lsi-Chr9:7047892 5.50E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02047 . . . . . . . . . . . Cmo04g02189 . Cma04g02087 . Car04g02026 . . . Bhi12g00866 . . . Hepe02g2678 . Lcy10g1456 Cla01g00588 Cam01g0614 Cec01g0605 Cco01g0630 Clacu01g0606 Cmu01g0579 Cre09g1926 Lsi09g00637 . Chy09g00877 Cme09g01410
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002121 2 3 2 3 1 2 3 2 2 2 2 2 3 2 2 3 2 3 0 2 2 1 2 2 2 2 2 4 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00637 Lsi_Chr09 FPKM 1.222222 1.281571 0.796056 0.962189 2.470495 2.285066 2.601182 0.0 0.0 0.054248