Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00638 ATGGCTTCACGCAGACTCTTATCTTCTCTTCTCCGATCGTCGGCACGGCGGTCTTCTTCCAGATCTCCGATCTCATCCCCCAACCCCAGGATTCCATTATCTCACACTTCTCGCGCTTCCCCATATGGGTACCTCCTCAACCGTGTGGCTCAGTACGCCACCTCCGCCGCCGCAGCTTCACCACCGTCCCCACCGTCATCCGCTAAGCCGGACGCGGGAAAGAGCGGGAAGATCACTGACGAGTTCACTGGAGCCGGCGCGATCGGCCAGGTTTGTCAGGTGATTGGAGCCGTCGTCGATGTCAGATTCGATGAAGGGTTACCTCCAATTCTTACGGCGCTCGAGGTGCTTGATCACTCGATCCGTTTGGTGCTGGAGGTGGCGCAGCATTTGGGAGAGAATATGGTCAGGACTATTGCTATGGATGGGACGGAAGGGCTCGTTCGAGGGCAGAAAGTGCTCAACACTGGTTCTCCTATCACTGTTCCAGTTGGTAGAGCTACTCTTGGACGTATTATAAATGTCATCGGAGAGCCTATTGATGAGAAAGGCGACCTTAAGACCGACCACTATTTGCCTATTCACAGAGAAGCCCCAGCCTTTGTTGAGCAAGCAACTGAGCAGCAAATTCTCGTAACTGGTATTAAGGTTGTCGACCTTCTTGCTCCATATCAAAGGGGAGGAAAGATTGGGCTTTTTGGTGGTGCTGGTGTGGGAAAAACTGTGCTTATCATGGAACTTATCAACAATGTTGCGAAAGCTCATGGTGGTTTCTCAGTGTTTGCTGGTGTCGGAGAACGCACTCGAGAGGGTAATGATTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGATAAACAGGCTGATAGCAAATGTGCCCTTGTGTATGGTCAAATGAATGAGCCCCCTGGTGCACGTGCTCGTGTTGGTCTTACCGGACTAACTGTGGCCGAACACTTCCGTGATGCTGAAGGACAGGATGTGCTTCTCTTCATCGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTGTCTGCACTGCTTGGACGTATTCCATCCGCTGTTGGTTACCAACCAACCTTGGCTACTGATCTGGGAGGTCTTCAAGAACGTATTACCACCACTAAGAAAGGATCTATTACTTCTGTACAAGCTATCTATGTGCCTGCTGATGATTTGACTGATCCTGCCCCTGCTACCACCTTTGCTCACTTGGATGCCACAACTGTGTTGTCGCGTCAGATTTCAGAGCTTGGTATTTATCCTGCTGTGGATCCTCTTGATTCTACATCTCGTATGCTCTCTCCTCATATTTTGGGAGAGGATCACTATAATACTGCTCGTGGAGTACAGAAGGTTCTTCAGAATTACAAGAATTTGCAAGATATTATTGCCATTCTGGGAATGGATGAGCTCAGTGAAGATGATAAGTTAACTGTTGCACGTGCACGTAAAATCCAACGGTTCCTGAGCCAGCCTTTCCATGTTGCTGAAGTATTTACTGGGGCACCTGGCAAATATGTGGAGCTGAAAGAAAGTATCAACAGTTTCCAGGGAGTTTTGGACGGAAAGTACGACGACCTTCCCGAACAATCATTCTACATGGTTGGAGGCATTGAAGAGGTCATTGCCAAGGCCGAGAAGATCGCCAAGGAATCCGCTGCCTAA 1680 49.23 MASRRLLSSLLRSSARRSSSRSPISSPNPRIPLSHTSRASPYGYLLNRVAQYATSAAAASPPSPPSSAKPDAGKSGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDHSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQKVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDLKTDHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7054782 7059466 + Lsi09G006380.1 Lsi09g00638 670251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00638 559 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
Lsi09g00638 559 MobiDBLite consensus disorder prediction 1 35 - -
Lsi09g00638 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Lsi09g00638 559 CDD F1-ATPase_beta 159 440 - -
Lsi09g00638 559 CDD ATP-synt_F1_beta_C 442 549 - -
Lsi09g00638 559 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
Lsi09g00638 559 PANTHER ATP SYNTHASE 3 558 - -
Lsi09g00638 559 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lsi09g00638 559 MobiDBLite consensus disorder prediction 1 38 - -
Lsi09g00638 559 PIRSF ATPase_subunit_beta 7 559 - -
Lsi09g00638 559 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Lsi09g00638 559 CDD ATP-synt_F1_beta_N 87 160 - -
Lsi09g00638 559 Gene3D - 77 159 - -
Lsi09g00638 559 Gene3D ATP synthase, F1 beta subunit 1 52 IPR042079 -
Lsi09g00638 559 SMART AAA_5 226 498 IPR003593 -
Lsi09g00638 559 MobiDBLite consensus disorder prediction 56 78 - -
Lsi09g00638 559 Gene3D - 160 437 IPR027417 -
Lsi09g00638 559 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 86 159 IPR036121 GO:0046034|GO:1902600
Lsi09g00638 559 Gene3D - 438 559 IPR024034 -
Lsi09g00638 559 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
Lsi09g00638 559 Pfam ATP synthase F1 beta subunit 1 48 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Lsi09g00638 559 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 558 - -
Lsi09g00638 559 TIGRFAM atpD: ATP synthase F1, beta subunit 88 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00638 K02133 ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta [EC:7.1.2.2] - csv:101205618 977.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00205 Lsi09g00638 CCT
Lsi04g00205 Lsi09g00638 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02834 Lsi-Chr2:34522871 Lsi09g00638 Lsi-Chr9:7054782 5.50E-27 transposed
Lsi09g01126 Lsi-Chr9:18057405 Lsi09g00638 Lsi-Chr9:7054782 5.54E-13 transposed
Lsi10g00814 Lsi-Chr10:11189738 Lsi09g00638 Lsi-Chr9:7054782 8.91E-58 transposed
Lsi11g01217 Lsi-Chr11:20747670 Lsi09g00638 Lsi-Chr9:7054782 8.33E-29 transposed
Lsi06g00931 Lsi-Chr6:19174310 Lsi09g00638 Lsi-Chr9:7054782 1.89E-64 transposed
Lsi04g00205 Lsi-Chr4:2162656 Lsi09g00638 Lsi-Chr9:7054782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g390 . Blo16g00724 Bda01g01841 Bda11g00156 Bpe13g01042 . . . Cmo04g01546 Cmo18g00993 . Cma18g00985 Car04g01533 Car18g00906 Sed06g1923 Cpe09g00332 . Bhi07g01249 Tan04g0788 Cmetu03g1471 Lac13g0552 Hepe01g1147 . . Cla05g02261 Cam05g2430 Cec05g2447 Cco05g2493 Clacu05g2419 Cmu05g2286 Cre05g2404 Cone13ag0789 Cone19ag0792 Cone6ag0416 Cone9ag0439 Lsi04g00205 Csa05g02046 Chy10g01193 Cme10g00209 . Blo11g01023 . Bda11g00156 . Bpe02g02015 . Bma06g01100 . Cmo04g02190 Cmo15g00978 Cma04g02088 Cma15g00938 Car04g02027 Car15g00881 Cpe13g00384 . Bhi12g00867 . . . Hepe02g2675 . Lcy10g1453 Cla01g00589 Cam01g0615 Cec01g0606 Cco01g0631 Clacu01g0607 Cmu01g0580 Cre09g1925 Lsi09g00638 . Chy09g00876 Cme09g01409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000576 6 4 5 5 3 4 4 3 3 2 3 2 4 3 3 7 4 5 2 4 2 0 2 2 3 3 3 6 3 2 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00638 Lsi_Chr09 FPKM 5.232304 5.223453 4.991352 4.958644 6.20314 7.454781 7.62497 3.169665 2.781146 2.555844