Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00639 ATGGCCGGCACGGCCTCATCCTCATCGGCCGGCACCAGTTCTAATATCATGCTCGCCATCTTCGAGAAGAAAACCACTCAACTCGATCTCTACCGCCCTCTCCGCAACTTCATCGCCTTCAATTACTCCGAGCGTGACGCCCAGAACCTCGAAGACGACCTTCAAACCCTCAAGGATTACCGCTCCGATCTCGAACGCCAGTCCGATCCCTCCCCCACCGCCCGCCGCGATCTCCTTCAAAGCTACTTCAAAGCCCTTTGCCTTGTCGAGACCCGATTCCCCATTTCCCCCGATAAGGACCATGTCAACACCATCACCTTCGTCTGGTGTGACGCCTTCAAGCAGAAGCAGAAGGCTTCTCAGCAGAATATCCACTTGGAGAAGGCTGCGGTTCTGTTCAATTTGGGTGCGGTTTACAGCCAGATTGGCCTCTCCTTCGATCGCGCTACTGTTGAGGGTCGTCGCCAGGCCTCGCACGCGTTTATTGCAGCGGCTGGGGCATTCGCCTTCTTGAGAGACAATGCGTCCACCAAAGCGTCGATTGGTAGCTCTACGACTGTGGATGTTTCGGTCGAGTGTGTCGGTATGTTGGAGAGGCTGATGTTAGCGCAGGCTCAGGAGTGCGTCTTTGAGAATACGATTGCGAAAGGCAGTACGCCTGGTGTCTGCGCAAAGATCTCTAGGCAGGTTGGTTTGTACTATGAGGAAGCTTTGGCAGCCCTCAATGCTCCACCTCTTAACCAGCATTTTGACAAGGCCTGGATCGCTCATGTGCAGCTGAAAGCAGCTTTGTTTCTTGCTGAAGCTTGCTACAGGTACAGTTTAGAGTTGCACGAGAAAGAAAATATTGCTGAGGAAATTGCTCGGTTGAAAAGTGGGATTAGTGCTTTGACTGAGGCTAAGAAGTCATCAAAAGGTGCTGCGGCGCAGCTTCTTGATGCTATTAACAAGTTAGAGGCCAATCTTAACCGTAATTTAGAGAGAGCTGTGAAGGAAAATGACAGAGTCTACCTCATGAGGGTTCCTAATCCTAGTACTCTGCCTCCTCTACCAGCTTTCTCCATGGTGAAGTCAATGGCAATGAATGAAGTGTTGGACGCCAGCAAGGAAAAGATGTTTGCTAGTCTTATTCCAGATAGCAGTGCTAAAGCTCTTTCTAGATACACTGAAATGGTTGATGACATTATACGAACACAAGCTGAGAAATTGCAACAGGCAAGTGAGCTCACCCGCGTAAGGCTCAAGGAAATGGACCTTCCAGAGTCTATTCTTGCTTTGGAAGGAAATTCTTCCCTGCCGACAGATATAAAAGAAGATGTTGAGGCAGTGCAAATTAGTGGAGGCCCAATAGGTTTGGAGGCTGAGTTACAACAACTCAGGGATCTAAGAAGAGTAAACAGTGAAATGCTAGTTCAGATTGAGGAGCTCCTGCAGAAAGAAGCAAGAGAGGATTCCCAATTTCGAAGTCAATTTGGGACTCGGTGGACTAGGCCTCAGTCCAGTACATTGACAAAGAACATACAAGATAGATTGAATAGATTTGCAGGTAACTTGAAACAAGCTGCAGAAAGTGATGCCAGGATTGAGCGTTCAGTGAAAGATCATTCAGCTCTCATGTCAATTCTTGATCACCGTCCAGTTGAGTCTGCTCTCCCAACTCTTGCTAGGCCGATAATGTCTTTGGATGCCAATGAAGATGCTATTCTTGGGACCCTAAAGCAAAGCTTGAGGCAGTTGGAAAATCTTGGTGCTCAACGAGCTGGTCTTGAAGACATGCTTAAAGAGATGAAGAGGAAGGATGATATACTACCAAAGTTGATGACATCAACTGGGTCCTATGAGGATCTTTTCAGGAAGGAGATATCCAAATATGACAATATATGCGAGGAGATTTCTCGAAACATTGAGGCCCAAGAACAATTGTTATTGCAAATTCAGGGCCAAAACAATGAGTTCTCTGTCATCTTTAATCTAGAAGACTACAAAGAGTTTTACTTCCTCCTTGTGTCTTTAGTTCATGAGAGCTTCTCTACTTATTCTGTTGGCTCTTCCCTTCATAAATTCAAGACTCGAGCTCTAATATTAAAACTTCCGTTTATCCTTGGTAGCATCAGATTGCTAGCATCCCGTGAAAGATGCTACAAACAAATTCAAGCTGCAGTAGCCAAGTACAGAGAAATCAAGGAGAACATCAATGAGGGATTAAAGTTTTACGTGACTCTTCAGGATGCAATCACTAATGTGAAGCAGCAATGCAGCGATTTTGTGATGACGAGAAACATCCAGTGCCGTGAAATGATGGAAGATGTCCAAAGACAAATGTCCGGCCTCAGTTTTCAGGACAGTAAAAACTCAGCTGGTGGCTATAACAATAACTATCCTTCAGTTGGACCCCACACACAACGGTCTCACTCGCCACAATCCGATGTTCGCCCTCCACAATCCTACTACCAACCACCTCATGAGCAGTCGCCTGTTGGTGGTTATGCTCAGCCCCATCCTCAAGCTCATCCCCAACCCCATCCCATGTACAGTTCCCCACAGCAGCCACCTCCTTACCATTCCCCTCCTGCTCCTGCGCTGGGTACTAGTCCCTACCCGCCGCACCCTCAGGCGCCTCAACAACCTTCAACAACCCACGAGTATGGCCAACCAGCATATCCAGGGTGGCAGGGGCCATACTACAACGCCCATGTTCCACAGCCTGGATCTATTCCTCGACCTCCTTACACCATCCCAAACCAGTATCCACCACATCAGCAAGGTGGTTACTACAAGCAACAATAA 2787 47.69 MAGTASSSSAGTSSNIMLAIFEKKTTQLDLYRPLRNFIAFNYSERDAQNLEDDLQTLKDYRSDLERQSDPSPTARRDLLQSYFKALCLVETRFPISPDKDHVNTITFVWCDAFKQKQKASQQNIHLEKAAVLFNLGAVYSQIGLSFDRATVEGRRQASHAFIAAAGAFAFLRDNASTKASIGSSTTVDVSVECVGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNAPPLNQHFDKAWIAHVQLKAALFLAEACYRYSLELHEKENIAEEIARLKSGISALTEAKKSSKGAAAQLLDAINKLEANLNRNLERAVKENDRVYLMRVPNPSTLPPLPAFSMVKSMAMNEVLDASKEKMFASLIPDSSAKALSRYTEMVDDIIRTQAEKLQQASELTRVRLKEMDLPESILALEGNSSLPTDIKEDVEAVQISGGPIGLEAELQQLRDLRRVNSEMLVQIEELLQKEAREDSQFRSQFGTRWTRPQSSTLTKNIQDRLNRFAGNLKQAAESDARIERSVKDHSALMSILDHRPVESALPTLARPIMSLDANEDAILGTLKQSLRQLENLGAQRAGLEDMLKEMKRKDDILPKLMTSTGSYEDLFRKEISKYDNICEEISRNIEAQEQLLLQIQGQNNEFSVIFNLEDYKEFYFLLVSLVHESFSTYSVGSSLHKFKTRALILKLPFILGSIRLLASRERCYKQIQAAVAKYREIKENINEGLKFYVTLQDAITNVKQQCSDFVMTRNIQCREMMEDVQRQMSGLSFQDSKNSAGGYNNNYPSVGPHTQRSHSPQSDVRPPQSYYQPPHEQSPVGGYAQPHPQAHPQPHPMYSSPQQPPPYHSPPAPALGTSPYPPHPQAPQQPSTTHEYGQPAYPGWQGPYYNAHVPQPGSIPRPPYTIPNQYPPHQQGGYYKQQ 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7061939 7072795 + Lsi09G006390.1 Lsi09g00639 670252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00639 928 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 9 663 - -
Lsi09g00639 928 Coils Coil 628 648 - -
Lsi09g00639 928 Coils Coil 459 479 - -
Lsi09g00639 928 Pfam BRO1-like domain 17 395 IPR004328 -
Lsi09g00639 928 CDD V_Alix_like_1 378 759 - -
Lsi09g00639 928 MobiDBLite consensus disorder prediction 779 814 - -
Lsi09g00639 928 Gene3D alix/aip1 in complex with the ypdl late domain 378 653 - -
Lsi09g00639 928 Coils Coil 280 335 - -
Lsi09g00639 928 MobiDBLite consensus disorder prediction 779 928 - -
Lsi09g00639 928 Gene3D alix/aip1 like domains 424 555 - -
Lsi09g00639 928 Coils Coil 572 599 - -
Lsi09g00639 928 SMART BRO1_2 16 400 IPR004328 -
Lsi09g00639 928 Gene3D alix/aip1 like domains 11 377 IPR038499 -
Lsi09g00639 928 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 708 914 - -
Lsi09g00639 928 Coils Coil 47 67 - -
Lsi09g00639 928 MobiDBLite consensus disorder prediction 835 874 - -
Lsi09g00639 928 Pfam ALIX V-shaped domain binding to HIV 431 654 IPR025304 GO:0005515
Lsi09g00639 928 Pfam ALIX V-shaped domain binding to HIV 708 761 IPR025304 GO:0005515
Lsi09g00639 928 CDD BRO1_Alix_like_1 17 372 - -
Lsi09g00639 928 ProSiteProfiles BRO1 domain profile. 15 410 IPR004328 -
Lsi09g00639 928 PANTHER PCD6 INTERACTING PROTEIN-RELATED 708 914 IPR045251 GO:0071985
Lsi09g00639 928 PANTHER PCD6 INTERACTING PROTEIN-RELATED 9 663 IPR045251 GO:0071985
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00639 K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein - csv:101206084 1557.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g393 Blo01g00742 Blo16g00725 . Bda11g00157 Bpe13g01041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0415 Cone9ag0438 . Csa05g02045 . . . . . Bda11g00157 . . Bma01g00446 Bma06g01101 . . Cmo15g00979 . Cma15g00940 . Car15g00882 Cpe13g00383 . Bhi12g00868 . . . . . Lcy10g1452 Cla01g00590 Cam01g0617 Cec01g0607 Cco01g0633 Clacu01g0609 Cmu01g0582 Cre09g1923 Lsi09g00639 . Chy09g00875 Cme09g01408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007554 2 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00639 Lsi_Chr09 FPKM 1.04878 1.214773 5.616335 3.987583 21.171844 18.498882 18.21686 1.3265 1.559681 1.040498