Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00646 ATGAGCAGCGAAGTCGTCGGAGACGGCCGGCGGCGTGCCTTAGCGCTGCAACTTCTTGACCTGGTACGTGACTTTGTTCTGATGTCAGGGAGGTCCATTGCTGGCGCCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATCGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTCTGCAGCGGCAGTGGGGAGAATTTTGAGGCATTGAATGATGATGGGTCTTCTTGTTCGTCTTCTTGGTTGGATTGTCTTTCGGAAGTGGTCGGAGCAATTCAGGCGGCGAAGCGGCTTCTTTACGCGGCTTTGACTTTCTCTGTATACGACGAGGAGGGTTGTGCGACTTCGACGGTTGATTTGGTTAGAGCTCAATTGAGGAGAGCATCAAACAAGTATGAATCTATGTCTAACCCTGCAGAAAAGAAGCTTCAAGCTAGATCAAGTTCTGTAAAATGGATGATCAATAATGATGTCAAGAGCATGTCTAGTGTTGATGACGATGGAGATGTAGAGTCTCAGCATCGTCCTCGGAACCGCGATCATTTGATTAGTCTCGATTCGGTGAATTCTTGCTTTGATGAGTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCTAGCAAGAGCCAAGATGAAGTTAGGAAGCCTGTTGAAGTTGAAATCCCTGAAAACTTCTTATGCCCCATTTCCTTTGAGTTGATAGGAAATAGAACATGTCCAAAAACTCAGGAGCAGCTCCAATCTCTGATCCTCACTCCAAATTTTTTAATGAGAAAACTGATCTCTGAATGGTGTGAAGAGCACAATGTGAAGCTAGAGGAAGGACTAACCACCAGGAAACTTAAGAAGTATAGATCATTCGAAGACGACTGCCGAAAGACTTTGCCGATAAAAACTCTGGTTCGACACCTTTCATTTGGGTCGATTCAGGAGCAGAAGATAGCCGTGACTGAGATCCGAAAGCTATCGAAAAGCAGCTCAGATCAAAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTTACCTTTTAACTTCAGAAGATGTTGCAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCATGAGCAAAACAAGAGACTTGTTATGCTTTCTGGTGCTGTTTCTTACATTTCCCAACTTCTCAAAGTTGGGAGCATGGAAGGGAGAGAATGTGCTGCTGCCACGATTTACAGCTTGTCACTAGCCGATGAGAACAAGGCAATAATCGGGGCTTCGGGTGTGATACCGGACCTGTTAGAAATCGTTGAGATCGGTAGCCCGAGAGGGCAAAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGCACCAAGGGAACAAAGGCAGGGCTTTCAAGGCTGGGATTGTCAAACCATTGTCGAAAATGCTGTCTGATTCAAATGGTTCTTTGGTTGATGACGCTCTCTATATAATGTCGGTTCTTTGCGGCCACCCGGAGGCGAAGGCTGCGATGGCGAATGCGAACTCCCTGCTTGTTTTGACTAACATTCTGAAGACGGGGTCGTCTCGCAGCAAGGAAAACGCAGCTGCTGTTCTACTTGCATTGTGCAAGGGAGACTACACCGACTGCGACGGCAAGGTCTCCCCTCACGATCTCCTCACCCACCTCCCCACTCTCATAGCCGAGGACCTGACCGAGGCAGAGGCCGCCGCCGCGGTGGCTGCCTTCGATTCGGACGGCGACGGGCTTCTGGGGATGGAGGAGTTTGGGAGGTTAGTGGAGGTGGATGATGATGAAGAGGTGAGGGAAGCTTTCCAGATGTATGAAATGGAGGGATTGGGAGTGATTACGCCGGTGAGCTTGCGGCGGACGCTCAGCCGCCTTGGGGAATCGAGGAGCGTCGGGGATTGCAAGAGAATGATTGCTAAATTTGATGTGAATGGCGATGGAGTTTTGTGTTTCGATGAATTTAGGGTTATGATGTTGCTCTGA 1992 48.19 MSSEVVGDGRRRALALQLLDLVRDFVLMSGRSIAGAGDVMKKDCTDLIRRIALLIHLAEEITNFCSGSGENFEALNDDGSSCSSSWLDCLSEVVGAIQAAKRLLYAALTFSVYDEEGCATSTVDLVRAQLRRASNKYESMSNPAEKKLQARSSSVKWMINNDVKSMSSVDDDGDVESQHRPRNRDHLISLDSVNSCFDECSSVVHSDMEDVLASKSQDEVRKPVEVEIPENFLCPISFELIGNRTCPKTQEQLQSLILTPNFLMRKLISEWCEEHNVKLEEGLTTRKLKKYRSFEDDCRKTLPIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDQRVEIAEAGAIPQLVYLLTSEDVATQENAISCILNLSLHEQNKRLVMLSGAVSYISQLLKVGSMEGRECAAATIYSLSLADENKAIIGASGVIPDLLEIVEIGSPRGQKDAAGALLNLCMHQGNKGRAFKAGIVKPLSKMLSDSNGSLVDDALYIMSVLCGHPEAKAAMANANSLLVLTNILKTGSSRSKENAAAVLLALCKGDYTDCDGKVSPHDLLTHLPTLIAEDLTEAEAAAAVAAFDSDGDGLLGMEEFGRLVEVDDDEEVREAFQMYEMEGLGVITPVSLRRTLSRLGESRSVGDCKRMIAKFDVNGDGVLCFDEFRVMMLL 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7207350 7213928 - Lsi09G006460.1 Lsi09g00646 670259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00646 663 ProSitePatterns EF-hand calcium-binding domain. 577 589 IPR018247 -
Lsi09g00646 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 344 386 IPR000225 GO:0005515
Lsi09g00646 663 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 22 111 - -
Lsi09g00646 663 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 122 540 - -
Lsi09g00646 663 Pfam EF hand 636 661 IPR002048 GO:0005509
Lsi09g00646 663 ProSitePatterns EF-hand calcium-binding domain. 645 657 IPR018247 -
Lsi09g00646 663 Pfam Armadillo/beta-catenin-like repeat 333 372 IPR000225 GO:0005515
Lsi09g00646 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 278 IPR013083 -
Lsi09g00646 663 Pfam EF-hand domain pair 544 591 IPR002048 GO:0005509
Lsi09g00646 663 SUPERFAMILY ARM repeat 304 559 IPR016024 -
Lsi09g00646 663 ProSiteProfiles EF-hand calcium-binding domain profile. 632 663 IPR002048 GO:0005509
Lsi09g00646 663 ProSiteProfiles U-box domain profile. 242 278 IPR003613 GO:0004842|GO:0016567
Lsi09g00646 663 SUPERFAMILY RING/U-box 223 278 - -
Lsi09g00646 663 SUPERFAMILY EF-hand 534 662 IPR011992 -
Lsi09g00646 663 SMART efh_1 568 596 IPR002048 GO:0005509
Lsi09g00646 663 SMART efh_1 636 663 IPR002048 GO:0005509
Lsi09g00646 663 SMART efh_1 600 628 IPR002048 GO:0005509
Lsi09g00646 663 PANTHER U BOX DOMAIN-CONTAINING 22 111 - -
Lsi09g00646 663 Gene3D - 286 563 IPR011989 -
Lsi09g00646 663 CDD EFh 600 661 IPR002048 GO:0005509
Lsi09g00646 663 PANTHER U BOX DOMAIN-CONTAINING 122 540 - -
Lsi09g00646 663 Gene3D - 564 663 - -
Lsi09g00646 663 ProSiteProfiles EF-hand calcium-binding domain profile. 564 599 IPR002048 GO:0005509
Lsi09g00646 663 SMART arm_5 374 414 IPR000225 GO:0005515
Lsi09g00646 663 SMART arm_5 497 537 IPR000225 GO:0005515
Lsi09g00646 663 SMART arm_5 456 496 IPR000225 GO:0005515
Lsi09g00646 663 SMART arm_5 333 373 IPR000225 GO:0005515
Lsi09g00646 663 SMART arm_5 415 455 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00646 - - - cmax:111489474 783.867
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01143 Lsi09g00646 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00834 Lsi-Chr2:7820161 Lsi09g00646 Lsi-Chr9:7207350 2.61E-34 dispersed
Lsi04g01143 Lsi-Chr4:15795236 Lsi09g00646 Lsi-Chr9:7207350 1.50E-144 dispersed
Lsi06g01634 Lsi-Chr6:26650893 Lsi09g00646 Lsi-Chr9:7207350 1.36E-28 dispersed
Lsi07g01466 Lsi-Chr7:21333931 Lsi09g00646 Lsi-Chr9:7207350 6.29E-25 dispersed
Lsi09g00646 Lsi-Chr9:7207350 Lsi10g01368 Lsi-Chr10:17834008 1.27E-78 dispersed
Lsi09g00646 Lsi-Chr9:7207350 Lsi02g01363 Lsi-Chr2:18368167 4.66E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g412 . . . . . Bpe10g00993 Bma14g01592 . Cmo04g01075 . Cma04g00997 . Car04g00936 Car04g00053 . . . . . . . . . . Cla07g00605 Cam07g0630 Cec07g0695 Cco07g0680 Clacu07g0636 Cmu07g0660 Cre07g1008 Cone13ag0773 Cone19ag0775 . . Lsi04g01143 . . Cme10g01508 Blo06g01023 Blo11g00735 . . Bpe11g01609 . . . . . Cmo15g00984 . Cma15g00946 . . . . . . . . . . . Cla01g00596 Cam01g0624 Cec01g0615 Cco01g0639 Clacu01g0615 Cmu01g0588 Cre09g1916 Lsi09g00646 Csa05g01046 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003338 2 7 0 1 1 1 1 1 2 2 1 1 1 2 2 2 1 1 2 1 2 1 3 2 1 2 1 2 1 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00646 Lsi_Chr09 FPKM 1.026274 1.071186 6.168619 6.259367 14.175065 12.736406 14.754079 12.470127 12.934601 16.344076