Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00661 ATGCACCCATATAATCGGCTGCCGAGCAGTGGCCACTCAACTCCGTCACCGCCGCCGTCGCCTCTCCGCTCCCCTCGGCTGAGGCACTCTCGGTCCAAGGGCGGCCGCTTCACTCAAGCTCAGCAACCGGGCCGGACCTTTCCCCAGCGACTCGCCTGGTTAATCCTCTCCGTTTTACTTCGTCGCCAAGGGATCTTCCTTTTCGCCCCTTTAATCTACATCTCCGGTATGCTTCTTTATATGGGCACTGTCTCTTTCGATGTCGTTCCAGTTATCAAGCATCGCCCTGCTCCCGGCTCTGTTTATCGAAGTCCACAACTCCTTGCCAAGCTTCGCTCCGAGATGGATGCTGATAACACTTCCACTGATGCGATATCAACAATATGGAAACACTCATATAAAGGTGGTCAGTGGAAACCATGTATCAACAATTCCTCGGGAGGTAAAGGACCGGTCAATAATGTTAATTCAAATCACGTTTTCTGTTCGTTTATATTTCTTGTATATGTTTATTTCCTAAAATACAACACTTCAGGAGGCCTACCTGAGTCAAATGGGTATATTTATGTTGAGGCAAATGGTGGTCTAAATCAGCAGAGAACATCAATATGCAATGCAGTTGCTGTGGCTGGCTATCTTAATGCAACACTTGTAATCCCTAATTTTCATTTCCACAGCATTTGGAGAGATCCTAGGTTTGTCCACATTCTACTTTATCCTACAAATCTTAACACTTTTTGTACTGTGTTATGTACCTACCTATTTACATTAGGTGTTAAGATGAGCACTTCTATGCAGACGATGCTTGAAAATTTCCTTACGAGTGTGCTTAATACTTATGATATTTGTGTATCTTTTCCGTTGGTCATCTCTTTCATTCATACTGGTTCTCTTTATGCAATAATTTTTAGAGGAAGAAATGTGGATAAGTATGCATTTGGGTTGCAAGGGATGTTGTTTTGCATATTACAATTTGAATTTCACAGTTTTTATATGGCATTATCTATTATTGATTATTTTCATCCATTTGTGTTAGATTCCTATGCTGGGGCTAGTACTACTTGCTTCCATTCAGTTGTACTACTTCTTCCTTTCTTCTGTATGGTTAAATCTAAAATAGGAAGACGCACAGCCATTTGGTTAAGTGAAAACCTACTTTCAAGGATAATTGGAAGAGGCAAAGTGGTTATAAGAAATATCTTTGTCGTTGCTAATTTTGGCTTTCTGTTGATCTCCAAGTTCAGCGAAATATATGATGAGGAATATTTTATCAAGACCTTAGAGAATGATGTACGCATTGTAAACAAGATTCCGGAATACATTATGGAACGCTTTGACCACAACATGACTAATGTCTACAACTTCAGAATAAAGGCATGGTCGTCCATTCAATATTACAAGGATACAGTGCTTCCAAGATTACTTGAAGAACTGGTTATAAGAATTTCACCTTTTGCAAACCGATTGTCATTTGATGCTCCTCCGGCTGTTCAACGGCTTCGATGTTTAGCAAATTATAAAGCATTGAGATTCTCTAATCCCATATTATCCTTGGGAGATATTTTGGTTGCGAGGATGAGAGAACGCAGTGCCAGTAATGGTGGCAAATATATTTCTGTACATCTTCGCTTTGAGGAGGATATGGTTGCATTCTCGTGTTGTATTTTTGATGGTGGACATAAAGAGATGGAAGACATGAAAGCTGCCAGAGAAAAAGGATGGAAAGGGAAATTCACAAAACCAGGCAGAGTTATACGTCCTGGTGCCATAAGGATTAACGGAAAATGCCCGTTGACTCCTTTAGAGGTGCTTGCTGTTTCTGCTTTTGCATTGTACCAGCTATACTTCATGATGCTTCAATCACACTTTCAATTGGATAATCTGTTAATTGTGAGGTCAGATGTCTTGTTTATGCATCTAATTCTTGTTGGTTTGATGCTTAGGGGAATGGGATTTGACAATAGCACATTTATTTATTTGGCTTCGGGAAAGATATACGATGCTGAGAGAAATATGGCTCCGCTTTTGGAGATGTTCCCAAATCTGCTTACAAAGGAAATGCTGGCATCACCTGAAGAACTTTCTCCATTCAAGAATTTTTCTTCCAGGATGGCTGCTATAGACTATACTGTTTGTCTCCACAGTGAGGTGTTCGTGACAACACAGGGTGGCAACTTCCCCCATTTTCTGATGGGTCATAGAAGATACTTGTACGGTGGACACTCCAAAACTATAAGGCCAGACAAGCGGAAGTTAGCATTACTTTTTGATAACCCTACCATTGGAAACAACCAGCTCCAAAGAAAGAGAAACAACCAGCCCCAAAAAAAGGCTCTACGGTCTACCCTCAACTGCGGAGTCCAATCCAAAAGAATGAGACCTGCCTCTTTCTTCTTCTTCTTCTTAATTGGCCACAAGGAGGCATGGAATTCAACGTTATCCCTCACTTCCTCCCAGAACGAGGATTCAAGAGGAGTTTCTGTATTGCAAATATTCCAAAACTACTTGGAGAAATGGTCGGAGTCGGTAATGATCATTGATCAAAAGGGAGTAGCTCCTTCAGAAATTTCCCCATCATTCAGATTCAGCATCTTCTTAAGCCAGATCAAAAGGGTTCTCTTTGGGCTACAAAAAATAGTGTTCAGAATAGCCCTTGGATTTAGAGTTGATAACGATTTACGAAGGAAACCTCGTATTCCAAAGCATAAACATGATGCATTGATTGCCACTGGTATCTTTCCAAATGCTGATTTCAGATGGAAAAATTTCAAGAGACACATGTTGAACATGCGGAGTCATAGCGATTCCAAGGGATTCGAGCTGAAAAGGCCAAACGACTCGATATACACCTTCCCTTGTCCAGATTGCATGTGCTTTACCAACAAATCAAACGATACGAAATCGTCATTAGCCCCTTGA 2919 41.11 MHPYNRLPSSGHSTPSPPPSPLRSPRLRHSRSKGGRFTQAQQPGRTFPQRLAWLILSVLLRRQGIFLFAPLIYISGMLLYMGTVSFDVVPVIKHRPAPGSVYRSPQLLAKLRSEMDADNTSTDAISTIWKHSYKGGQWKPCINNSSGGKGPVNNVNSNHVFCSFIFLVYVYFLKYNTSGGLPESNGYIYVEANGGLNQQRTSICNAVAVAGYLNATLVIPNFHFHSIWRDPRFVHILLYPTNLNTFCTVLCTYLFTLGVKMSTSMQTMLENFLTSVLNTYDICVSFPLVISFIHTGSLYAIIFRGRNVDKYAFGLQGMLFCILQFEFHSFYMALSIIDYFHPFVLDSYAGASTTCFHSVVLLLPFFCMVKSKIGRRTAIWLSENLLSRIIGRGKVVIRNIFVVANFGFLLISKFSEIYDEEYFIKTLENDVRIVNKIPEYIMERFDHNMTNVYNFRIKAWSSIQYYKDTVLPRLLEELVIRISPFANRLSFDAPPAVQRLRCLANYKALRFSNPILSLGDILVARMRERSASNGGKYISVHLRFEEDMVAFSCCIFDGGHKEMEDMKAAREKGWKGKFTKPGRVIRPGAIRINGKCPLTPLEVLAVSAFALYQLYFMMLQSHFQLDNLLIVRSDVLFMHLILVGLMLRGMGFDNSTFIYLASGKIYDAERNMAPLLEMFPNLLTKEMLASPEELSPFKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLALLFDNPTIGNNQLQRKRNNQPQKKALRSTLNCGVQSKRMRPASFFFFFLIGHKEAWNSTLSLTSSQNEDSRGVSVLQIFQNYLEKWSESVMIIDQKGVAPSEISPSFRFSIFLSQIKRVLFGLQKIVFRIALGFRVDNDLRRKPRIPKHKHDALIATGIFPNADFRWKNFKRHMLNMRSHSDSKGFELKRPNDSIYTFPCPDCMCFTNKSNDTKSSLAP 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7383415 7395024 + Lsi09G006610.1 Lsi09g00661 670274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00661 972 PANTHER PROTEIN ESMERALDA 1 411 604 - -
Lsi09g00661 972 PANTHER - 642 770 IPR024709 -
Lsi09g00661 972 PANTHER PROTEIN ESMERALDA 1 642 770 - -
Lsi09g00661 972 Pfam GDP-fucose protein O-fucosyltransferase 413 737 IPR019378 -
Lsi09g00661 972 Pfam GDP-fucose protein O-fucosyltransferase 187 232 IPR019378 -
Lsi09g00661 972 MobiDBLite consensus disorder prediction 1 42 - -
Lsi09g00661 972 CDD O-FucT_plant 187 744 IPR024709 -
Lsi09g00661 972 PANTHER - 176 232 IPR024709 -
Lsi09g00661 972 PANTHER PROTEIN ESMERALDA 1 912 969 - -
Lsi09g00661 972 PANTHER PROTEIN ESMERALDA 1 1 148 - -
Lsi09g00661 972 PANTHER - 1 148 IPR024709 -
Lsi09g00661 972 PANTHER - 411 604 IPR024709 -
Lsi09g00661 972 PANTHER - 912 969 IPR024709 -
Lsi09g00661 972 PANTHER PROTEIN ESMERALDA 1 176 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00661 - - - csv:101205140 611.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00026 Lsi-Chr8:676363 Lsi09g00661 Lsi-Chr9:7383415 8.96E-11 dispersed
Lsi09g00661 Lsi-Chr9:7383415 Lsi07g01286 Lsi-Chr7:18810613 1.98E-11 dispersed
Lsi09g00661 Lsi-Chr9:7383415 Lsi08g00985 Lsi-Chr8:18296828 5.13E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g433 . Blo16g00730 Bda01g01817 Bda11g00164 . . . . . . . . . . . . Cpe01g01848 . . . . . . . . . . . . . . Cone13ag0759 Cone19ag0763 Cone6ag0395 Cone9ag0421 . Csa05g02022 . . . . . Bda11g00164 . Bpe02g01993 Bma01g00466 . . . Cmo15g00996 . Cma15g00957 . Car15g00901 Cpe13g00368 . Bhi12g00905 . . . . . . Cla01g00610 Cam01g0638 Cec01g0630 Cco01g0657 Clacu01g0628 Cmu01g0601 Cre09g1901 Lsi09g00661 . Chy09g00850 Cme09g01383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004536 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00661 Lsi_Chr09 FPKM 0.0 1.043217 0.994375 1.49958 0.0 1.22964 2.051308 0.225633 0.657788 0.84883