Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi09g00665 | ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGTTGCACGGTGTTAATCTCGCTATTCGTGATTCCCGTAGCAGCGATCCTTATGTCGTCGTCACAATGGGCGAGCAGATTGAAGTGTGCTTTATGCTTAAGTTTCTTGAATCAGTGCATATTAATTTAGCTCGTTTTAGGTTTATTCATTATTCAGTTGTTCTCTGTTCCCTTCTTCCCCCTTGGGAAGTTCGTATCTTTGAATACTTATTTAACTTTTTAACTCTTGATGAAAAGATAACAGGTAAATCTATGGTAAGATCGGTTGATCCAACTTACTCTTGGTCTACTTTTATGAGGTATTTGATTCGTAGGTTGAAGACCCGGGTGGTGAAAAATAATTGCAATCCTGAATGGAATGATGAGTTGACTCTTTCAGTTGCAGATCTCAGGACTCCAATCGGTTTATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATTGAACCGTACATCGAGTGTTTGAAGATGGGACTGGAGAGCCTCCCAGATGGGTGTGTGGTTAAGAGAGTATATCCAAAAAGAACAAACAATTTAGCTGATGAGAGCCAATGTGTTTGGCAGAAGGGGAAAATTGTACAGAACATGTTCCTGAGGTTGAAGAATGTAGAGTGTGGTGAGGTGGCAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTCTGCCGATTGGGGGTACGAGCCACTTCTGA | 756 | 42.46 | MEHFLGLLRIRVLHGVNLAIRDSRSSDPYVVVTMGEQIEVCFMLKFLESVHINLARFRFIHYSVVLCSLLPPWEVRIFEYLFNFLTLDEKITGKSMVRSVDPTYSWSTFMRYLIRRLKTRVVKNNCNPEWNDELTLSVADLRTPIGLSVYDKDTLTDHDKMGDAEIDIEPYIECLKMGLESLPDGCVVKRVYPKRTNNLADESQCVWQKGKIVQNMFLRLKNVECGEVAIQLEWIDVPGAKGLPIGGTSHF | 251 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 7443141 | 7445538 | + | Lsi09G006650.1 | Lsi09g00665 | 670278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi09g00665 | 251 | ProSiteProfiles | C2 domain profile. | 1 | 184 | IPR000008 | - | |
| Lsi09g00665 | 251 | Gene3D | C2 domain | 5 | 242 | IPR035892 | - | |
| Lsi09g00665 | 251 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 234 | IPR035892 | - | |
| Lsi09g00665 | 251 | SMART | C2_3c | 7 | 180 | IPR000008 | - | |
| Lsi09g00665 | 251 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 241 | - | - | |
| Lsi09g00665 | 251 | Pfam | C2 domain | 114 | 170 | IPR000008 | - | |
| Lsi09g00665 | 251 | Pfam | C2 domain | 6 | 37 | IPR000008 | - | |
| Lsi09g00665 | 251 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 241 | IPR044562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g00329 | Lsi-Chr5:4192568 | Lsi09g00665 | Lsi-Chr9:7443141 | 2.68E-09 | dispersed | |
| Lsi09g00665 | Lsi-Chr9:7443141 | Lsi02g00943 | Lsi-Chr2:9334771 | 4.27E-08 | dispersed | |
| Lsi09g00665 | Lsi-Chr9:7443141 | Lsi06g01282 | Lsi-Chr6:23371671 | 2.37E-40 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi09g00665 | - | - | cpep:111784790 | 261.151 |