Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00665 ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGTTGCACGGTGTTAATCTCGCTATTCGTGATTCCCGTAGCAGCGATCCTTATGTCGTCGTCACAATGGGCGAGCAGATTGAAGTGTGCTTTATGCTTAAGTTTCTTGAATCAGTGCATATTAATTTAGCTCGTTTTAGGTTTATTCATTATTCAGTTGTTCTCTGTTCCCTTCTTCCCCCTTGGGAAGTTCGTATCTTTGAATACTTATTTAACTTTTTAACTCTTGATGAAAAGATAACAGGTAAATCTATGGTAAGATCGGTTGATCCAACTTACTCTTGGTCTACTTTTATGAGGTATTTGATTCGTAGGTTGAAGACCCGGGTGGTGAAAAATAATTGCAATCCTGAATGGAATGATGAGTTGACTCTTTCAGTTGCAGATCTCAGGACTCCAATCGGTTTATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATTGAACCGTACATCGAGTGTTTGAAGATGGGACTGGAGAGCCTCCCAGATGGGTGTGTGGTTAAGAGAGTATATCCAAAAAGAACAAACAATTTAGCTGATGAGAGCCAATGTGTTTGGCAGAAGGGGAAAATTGTACAGAACATGTTCCTGAGGTTGAAGAATGTAGAGTGTGGTGAGGTGGCAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTCTGCCGATTGGGGGTACGAGCCACTTCTGA 756 42.46 MEHFLGLLRIRVLHGVNLAIRDSRSSDPYVVVTMGEQIEVCFMLKFLESVHINLARFRFIHYSVVLCSLLPPWEVRIFEYLFNFLTLDEKITGKSMVRSVDPTYSWSTFMRYLIRRLKTRVVKNNCNPEWNDELTLSVADLRTPIGLSVYDKDTLTDHDKMGDAEIDIEPYIECLKMGLESLPDGCVVKRVYPKRTNNLADESQCVWQKGKIVQNMFLRLKNVECGEVAIQLEWIDVPGAKGLPIGGTSHF 251
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 7443141 7445538 + Lsi09G006650.1 Lsi09g00665 670278
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00665 251 ProSiteProfiles C2 domain profile. 1 184 IPR000008 -
Lsi09g00665 251 Gene3D C2 domain 5 242 IPR035892 -
Lsi09g00665 251 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 234 IPR035892 -
Lsi09g00665 251 SMART C2_3c 7 180 IPR000008 -
Lsi09g00665 251 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 1 241 - -
Lsi09g00665 251 Pfam C2 domain 114 170 IPR000008 -
Lsi09g00665 251 Pfam C2 domain 6 37 IPR000008 -
Lsi09g00665 251 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 241 IPR044562 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00329 Lsi-Chr5:4192568 Lsi09g00665 Lsi-Chr9:7443141 2.68E-09 dispersed
Lsi09g00665 Lsi-Chr9:7443141 Lsi02g00943 Lsi-Chr2:9334771 4.27E-08 dispersed
Lsi09g00665 Lsi-Chr9:7443141 Lsi06g01282 Lsi-Chr6:23371671 2.37E-40 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00665 - - cpep:111784790 261.151