Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00666 ATGAAGAGGGAGCATCACCATCTTCATCCCCGTCCGGAGCCGCTTTCCATGGCTGCCGTCCCTAATGGGGAGAGTTATTTGAACACTGGTAAGGCTAAGCTCTGGGAGGAGGAAGCACAGCTCGATGGAGGAATGGATGAGCTTCTTGCTGTTTTGGGTTACAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCTCAGAAGCTCGAACAACTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGCCTTTCGCATCTCGCTTTTGACACTGTTCATTATAATCCCTCTGATCTGTCAACTTGGCTTGAGAGTATGCTCACGGAGCTCCATCCGACGCCTAATTTTGCGCCGCTGCCACCTCCTTCGCAGCTGGATGAATCGTCGTTTTTAGCTCCGGCGGAATCCTCCACCATCACCTCCATTGATTACGACCCCCAACGGAAAACCAGCAGCCGGATTTTCGAGGAATCTTCTAGTTCTGATTACGACCTTAAAGCTATCACCAGCAGTGCGATTTATTCACCGAGAGAGAATAAGCGTTTGAAATCCTCTGAGTCGGACTCGGATTTGTTCTCCACCTCGGCGATTGGGGCTTCCGATTCTGTAACTCGCCCCGTCGTCCTCGTCGACTCGCAGGAGAACGGAATTCAACTTGTTCATGCCCTGATGGCCTGTGCCGAAGCCGTACAGCAGAACAATCTGAATCTAGCGGAGGCTCTGGTGAAGCGAATCGGTTATTTGGCGGTTTCTCAAGCCGGAGCGATGAGGAAGGTCGCCACGTTCTTCGCCGAAGCGTTGGCACGCCGAATCTACAGGCTCTGCCCTGAGAATCCCCTCGATCATTCAGTGTCCGATAGGCTTCAGATGCATTTCTACGAGAGCTGTCCCTATCTGAAATTCGCACATTTCACCGCAAATCAAGCGATTCTTGAAGCCTTCGAAGGGAAGAAGCGTGTTCACGTAATCGATTTCTCGATGAACCGAGGGATGCAGTGGCCAGCACTGATTCAAGCCCTAGCTCTACGGCCCAACGGTCCTCCAGCCTTCCGCCTCACCGGAATTGGCCCTCCGGCGCCTGATAACTCAGATTACCTCCAAGAAGTGGGCTGGAAACTAGCTGAATTGGCCGAAGCTATCCATGTGGAGTTCGAGTACAGAGGATTTGTGGCGAATAGCTTGGCGGATCTGGACGCATCGATGCTGGAGCTCCGCCCGAGCGAGGTGGAGTCGGTGGTGGTGAACTCAGTGTTCGAGCTGCATAAGCTACTGGCTCGCCCTGGTGCCCTCGAAAAGGTTCTGTCGGTGGTCAAGCAGATGAAGCCGGAGATCATAACGGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTCGACCGGTTCACTGAGTCACTTCATTACTACTCGACGCTTTTTGACTCGTTGGAGGGCTCCCCAAACAACCAGGACAAGATCATGTCCGAAATGTACCTTGGGAAGCAAATTTGCAACGTAGTGGCTTGTGAAGGCGCCGACCGAGTCGAACGTCACGAGACCTTGACTCAGTGGCGGACTCGGTTGTCCTCCGCCGGGTTCGAACCCATCCACCTTGGCTCAAACGCATTCAAGCAAGCGAGTATGCTCCTCGCCCTATTCGGCAGCGGAGAAGGCTACCGGGTAGAAGAAAACAACGGATCACTAATGCTTGGATGGCACACTCGCCCCCTCATCGCCACCTCCGCCTGGAAACTTGGCAACAACCCGGTGGTTGCTCACTGA 1761 53.61 MKREHHHLHPRPEPLSMAAVPNGESYLNTGKAKLWEEEAQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWLESMLTELHPTPNFAPLPPPSQLDESSFLAPAESSTITSIDYDPQRKTSSRIFEESSSSDYDLKAITSSAIYSPRENKRLKSSESDSDLFSTSAIGASDSVTRPVVLVDSQENGIQLVHALMACAEAVQQNNLNLAEALVKRIGYLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDHSVSDRLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNRGMQWPALIQALALRPNGPPAFRLTGIGPPAPDNSDYLQEVGWKLAELAEAIHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGALEKVLSVVKQMKPEIITVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNQDKIMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLMLGWHTRPLIATSAWKLGNNPVVAH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7460521 7462281 - Lsi09G006660.1 Lsi09g00666 670279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00666 586 Gene3D - 44 109 IPR038088 -
Lsi09g00666 586 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 578 IPR005202 -
Lsi09g00666 586 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Lsi09g00666 586 Pfam GRAS domain family 218 577 IPR005202 -
Lsi09g00666 586 ProSiteProfiles GRAS family profile. 209 577 IPR005202 -
Lsi09g00666 586 Coils Coil 54 74 - -
Lsi09g00666 586 PANTHER DELLA PROTEIN GAI1-RELATED 20 578 IPR030006 GO:0003712|GO:0005634
Lsi09g00666 586 SMART DELLA_2 46 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00916 Lsi-Chr6:18881611 Lsi09g00666 Lsi-Chr9:7460521 3.64E-152 dispersed
Lsi09g00666 Lsi-Chr9:7460521 Lsi09g00929 Lsi-Chr9:11528705 0 dispersed
Lsi09g00666 Lsi-Chr9:7460521 Lsi10g00057 Lsi-Chr10:977937 5.37E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25889 PF03514 GRAS 8.60E-136 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00666 K14494 - csv:101204164 1108.2