Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00668 ATGCCTCGAAGGCCAACAAAGAGGCGCCAGCTGCGGGGAACTCGTCCTTTAACTTTTTCCTCATTTGCTCGGACTTCGTGTATGGCTAGGAATCAAATTTTGAAGTCGAAAGTAGTGAAATCTCACCCTAAACATGAAGGTAATGGTTTTATTAGGAATAGTCCTGAGCCTCAGAGTGAATCGGCTGACTCTTCTTCCAGTGGTGAAGAGTTTGAAGAAGTTCAAGCAGACTTTGCCTTTTTTGATCCCAAACCTGATGATTTTCATGGGGTGAAGACATTGCTGCAGAACTACCTAGATGACACACAGTGGGATATTAGTGGATTTTCTGATCTAATATTAGGACAAACCACAGTTGGTAGTGTTGTCAAAGTAGAGGGGGATGAAGATAATGGGGTATTCTCTTTTATCACAGCCCTTAACTTGGAAAGATATAAGGACAGTAGATCTGTACTGGAGCTCAAGGAGTATCTCTTCAAAGTTTGCCAGGACAAGGATATAAAGAATGACTTGAAGCGACTTCTGGAGGAGCAAGCATCCAGTGTAGGTCTCATAGTCTCTCAGAGAATTGTGAATCTTCCACCTCAACTTTTGCCACCCCTTTATGATGCCCTTTTCGATGAAATCTCCTGGGCCATTGAGGATGAGCCAACTAAAGAGCTCCAGGATTCCTTCCGCTTCAAATTGTATATTTTAGTCAGTAAAATTTACAAGAAGATGAAATACTTCACAAGTTGTGTTTATGGTCCTTCTGCTTTCCATTGCACGTCCAACCACAGACAACTAATGAGGCAACTAAAAGGGTACCAGTTAATGGGAATAGTAATGGCTGTTGAAGCAAGAAAAGTTCCCGCATTTCGAGATGAGTTGAAATCTTTAATAAGTGAATCC 891 41.75 MPRRPTKRRQLRGTRPLTFSSFARTSCMARNQILKSKVVKSHPKHEGNGFIRNSPEPQSESADSSSSGEEFEEVQADFAFFDPKPDDFHGVKTLLQNYLDDTQWDISGFSDLILGQTTVGSVVKVEGDEDNGVFSFITALNLERYKDSRSVLELKEYLFKVCQDKDIKNDLKRLLEEQASSVGLIVSQRIVNLPPQLLPPLYDALFDEISWAIEDEPTKELQDSFRFKLYILVSKIYKKMKYFTSCVYGPSAFHCTSNHRQLMRQLKGYQLMGIVMAVEARKVPAFRDELKSLISES 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7508830 7511934 + Lsi09G006680.1 Lsi09g00668 670281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00668 297 MobiDBLite consensus disorder prediction 34 68 - -
Lsi09g00668 297 PANTHER BRCA2 AND CDKN1A INTERACTING PROTEIN 40 239 IPR025602 -
Lsi09g00668 297 MobiDBLite consensus disorder prediction 52 68 - -
Lsi09g00668 297 Pfam BCCIP 73 241 IPR025602 -
Lsi09g00668 297 PANTHER BRCA2 AND CDKN1A-INTERACTING PROTEIN 40 239 - -
Lsi09g00668 297 PIRSF BCP1 244 297 IPR025602 -
Lsi09g00668 297 PIRSF BCP1 27 246 IPR025602 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00668 K15262 BCP1, BCCIP; protein BCP1 - csv:101218410 426.787
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g01001 . Cma15g00961 . Car15g00907 Cpe13g00363 . Bhi12g00916 . . . . . . Cla01g00618 Cam01g0646 Cec01g0638 Cco01g0664 Clacu01g0634 . . Lsi09g00668 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007192 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 5 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00668 Lsi_Chr09 FPKM 98.99543 88.593529 0.62904 0.0 0.204758 0.0 0.0 1.647386 1.503754 0.734613