Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00669 ATGTTGGCCTCTGCAATTTCAATACCCACCAATCTCAACTTCTCCCTTTCCTATTCTCAACGCACACTCTCAAGCACTCCCATGAAGCTTTTTCCAGTTGTTGCCGTTATGGGAATTCCTAAACCCACAGACGTATCGCTCTTTCTCTATCGTTTTCGTTTCTCCTCAGAATCTCTCTCGAAACGCGTTGTTTGCAGGCGGGTTAGCAGTGATGGTGGTGCTGCAGCTGATTCTTCGCACCAGCAGTCTGTAGCTCCTGGCATCAAAGATGTACAGAATGACTCTTCTAGCGTTGGACACAGTTATGTGGCATTATTTGTCCGGATGCTCGGCTTAGATCATGATCCTCTTGATAGAGAACAAGCAATCATAGCTTTATGGAAATATTCCCTTGGAGGGAAGAAGCACATAGATGCCATCATGCAGTTTCCTGGATGCATAAATCTAACAGTAAATCTTCTTAGGTCAGAGTCAATCTCTACGTGTGAAGCAGCTGCTGGCCTTTTACGGTCAATTTCTCTGGTGAACTTATACCGAGATTCAGTTGCAGAAAGTGGAGCAATTGAAGAGATAACTGGCTTGCTTAGTCAACCGTCCTTGACTCCCGAGGTGAAGGAGCAAAGCATCTGCGTTTTGTGGAATTTGTCAGTAGATGAAAAACTCAGAACTAAGATTGCAAACACTGATATTCTGCCATTGCTTAGTAAGAATCTTGATGACGAGGACATGAAGGTGAAGGAAGCAGCTGGAGGGGTATTAGCAAATCTGGCTTTGAGCCCATGTAACCATGGGGTCATTGTAGAATCAGGCTTAATTCCTAAACTGGCATATCAGTTAAAAGCTGAGGCAGACAGCTCAAAAATTTTGAGAAAGGAAGCAAGAAATGCGTTGCTTGAGCTTTCTAAAGATGAATATTATAGAATTCTTGTCATAGAGGAAGGACTAGTTCCAGTACCGATTCTTGGTGCTGCTGCCTATAAATCCTTCAGACCAGGCTTGCATTCATGGCCCAGTTTGCCTGATGGCACAGAAATTGAACAATCTTCCAAAGAACCTTCAAGATTTGGTGCCTCTGAATTACTCCTTGGGTTAAATGTTGATAATAATGCAAACATAGAAGAAGGCAAGATAAATGCAATTGTTGGACGGACACAGCAACAGTTTCTGGCTCGTATAGGTGCCATAGAATTTGAAGATCTGAAGGACTCTCAATCTGAATCATCTACCAGTAACCATCTTACACTCTTACCTTGGATAGATGGTGTGGCTCGACTAGTTTTAATCCTTGAACTTGAGGATGATAATGCCGTAGTGAGAGCTGCAGAGTCGATCGCTGATGCATCTATCAATGAACACATGCGTATTTCATTTAAGGAAGCTGGAGCAATCAAACATTTGGTCAAGTTTTTAGATTATATGAATAATTCTGTCAAATGGGCTACAGTTCAAGCTCTAGAGAGACTGTCAATTAGCAATGTTGTTTGCCAGACAATTGAAAATGAAGGTGCACTTGGTCCTTTGCTCAGTATTTTAAAGCTCTCAAGTATCCCTGAAACTGTGATGGAGAAGACCCTGGATATACTTTCTCGGATCTTGGACCCTAGTAAAGAAATGAAATCAAAGTTTTACAGTGGACCGGTAAACGGGTCTCAAGGGGGACATCATTCAGAAAGAAATTTTGAAGCTTCTACCAGGAAAGATGTGCTGGATGTTGCTGTTGTTTCTCGCCTAGTTGAGATTTTGAACTCCTCATCCCCAAACTTGAAACGGAAAGCTGCTTCTATTCTGGAATTTATTTCTATTATGGACCCAAGCATGGAAAGAATCGATTCCATGGAGATAGAGTCTGGATTGTCGGCTGTTTTCCAGCTTGGAGTTTCCATAGATTCTGATGCTGAAGATTGGCAGCCTGAAAGATATGCCCTTGAAGTTGAGGAAGCTGGTCTTGCAATTTCAGCAGCCTCCCGATTATTAACAAAGCTTCTGGATTCTGAAAAGTTCTGCAACAAAATAAACTCCGCTCATTTCACTAAGTTGCTTCGTCGAATCCTGAAATCGGACATTCCCATTAATCACAAAGATTGGATTGCTGCTTGCCTAATCAAAATCAGCTCCGTTTCAGGTCTGAACACAGATTCCAGAGATCCTATCAACATGGAGGTCACTCTCTATGAAACTATACCGAGACTTATTCAACAGATCAAAAGCTCCTTCTCCATGGAAGTTCAGGAATCTGCTGTTGTGGAGCTGAACAGAATAGTCTCAGAGGGAATAGTCGATGCTACCCGAGCTGTTGCTTCGAAAGGCGGTATCTTTCCATTGGTAAAACTGATTGATGAAGGAAGTGAGAGAGCAACAGAAGCAGCCTTAGCTATACTGTATAATCTGAGCATGGACACTGAAAATCATCCAGCAATTATAGCTGCTGGAGCTGTGCCAGCATTGAGGAAAATTGTTCTATCGCAACGAGTGCAGTGGCGACAAGCTCTTTATTTGTTGAGGACGTTGCCTACATGA 2517 42.55 MLASAISIPTNLNFSLSYSQRTLSSTPMKLFPVVAVMGIPKPTDVSLFLYRFRFSSESLSKRVVCRRVSSDGGAAADSSHQQSVAPGIKDVQNDSSSVGHSYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKKHIDAIMQFPGCINLTVNLLRSESISTCEAAAGLLRSISLVNLYRDSVAESGAIEEITGLLSQPSLTPEVKEQSICVLWNLSVDEKLRTKIANTDILPLLSKNLDDEDMKVKEAAGGVLANLALSPCNHGVIVESGLIPKLAYQLKAEADSSKILRKEARNALLELSKDEYYRILVIEEGLVPVPILGAAAYKSFRPGLHSWPSLPDGTEIEQSSKEPSRFGASELLLGLNVDNNANIEEGKINAIVGRTQQQFLARIGAIEFEDLKDSQSESSTSNHLTLLPWIDGVARLVLILELEDDNAVVRAAESIADASINEHMRISFKEAGAIKHLVKFLDYMNNSVKWATVQALERLSISNVVCQTIENEGALGPLLSILKLSSIPETVMEKTLDILSRILDPSKEMKSKFYSGPVNGSQGGHHSERNFEASTRKDVLDVAVVSRLVEILNSSSPNLKRKAASILEFISIMDPSMERIDSMEIESGLSAVFQLGVSIDSDAEDWQPERYALEVEEAGLAISAASRLLTKLLDSEKFCNKINSAHFTKLLRRILKSDIPINHKDWIAACLIKISSVSGLNTDSRDPINMEVTLYETIPRLIQQIKSSFSMEVQESAVVELNRIVSEGIVDATRAVASKGGIFPLVKLIDEGSERATEAALAILYNLSMDTENHPAIIAAGAVPALRKIVLSQRVQWRQALYLLRTLPT 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7513534 7519585 + Lsi09G006690.1 Lsi09g00669 670282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00669 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 769 811 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 713 755 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 758 798 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 175 217 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 799 838 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 218 258 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 134 174 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 561 601 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 450 490 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 491 533 IPR000225 GO:0005515
Lsi09g00669 838 SMART arm_5 259 302 IPR000225 GO:0005515
Lsi09g00669 838 SUPERFAMILY ARM repeat 100 316 IPR016024 -
Lsi09g00669 838 Gene3D - 84 324 IPR011989 -
Lsi09g00669 838 SUPERFAMILY ARM repeat 420 819 IPR016024 -
Lsi09g00669 838 Gene3D - 571 837 IPR011989 -
Lsi09g00669 838 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 49 838 - -
Lsi09g00669 838 MobiDBLite consensus disorder prediction 74 92 - -
Lsi09g00669 838 MobiDBLite consensus disorder prediction 72 92 - -
Lsi09g00669 838 Gene3D - 422 544 IPR011989 -
Lsi09g00669 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 230 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00669 - - - bhj:120067080 1501.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00669 Lsi-Chr9:7513534 Lsi02g01363 Lsi-Chr2:18368167 8.88E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00669 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.675463 0.455895 0.301409 0.0 0.0 0.0