Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00670 ATGGCCGCCAACAAATTTGCCACCATCTTGCACAGAAACTCCAACAAAATCACCCTTATTTTAGTTTACGCTCTTCTTGAATGGGTTCTGATCTTTCTTCTTCTTCTTCATGGTCTTTTCTCTTACCTGATCGTTAAATTTGCAGAGTGGTTTGGGCTGAAGCGCCCCTGTTTGTGGTGTTCCAGAGTCGACCATGTTTTCGAGCCTGAGAGAAAGCATTCTTATAGAGATCTTCTTTGTGAAGCTCATGCCATGGAGATTTCTAATCTGGGTTACTGTTCGAATCATCGGAAACTATTGGAGTTTCGAGATTTGTGCGAGGATTGCTCATCCTCTTCTAAGTCTCACGAGTTCTATCAAATTCCTAAGAGCTTTCCCTTTTTTGGAGATGAGAAGGAGGATTTCAGGAGCTGTTCTTGCTGTGGGGAGACTTTGAAGAATCGATTGTTTTCCCCTTGTATTTTGATCAAACCGAATTGGGGGGATTTGGATTATACCCAGAAGGGGAATTTGATTTCTGAGGCGGAAACTGATGAAATCCATGTTTCTCAATCGGAAGATATCATCGGAAACAGGGAAATCTCTGTTGTTTCCGGTGGGGAAGAGGCAGAGAAGAACTCAACTTGCTCTGTTTGTGGCTGTGGCTGTAAAGATTCGGCGGTTCATGAGGATGATGATGATAGAGCTGAATTGGTTGCTGAAAAAGATGGGGATTTTCTTGAGCTAGCTGAAGATCTGACCACTTGTAATCAAGAATCAGTTCAAGTTTGTTGTGAGAAAGAGGATGAATTGCCTGAGACTATTCCTCATCATCTTGAGTTCTACATTGACCGGGGTGATGATCGGCGGCTGATTCCAGTTGATTTGATCGATTTTTCTGCCCCTGACGACGACGACGACAACAACAACAGCAACATCCTAAGCCAAGTGAAAGATGAGGAACAAGAACAAGAACAAGAACAAGAGGATTGTGGGAATGAAGATGTTGTTTTGGATTTTGGTTCGCACTTTGAGAATCAAAGGCATGGTGTGACTGAAGATTGGGAAGTTATTTCAGGAGAGAGATTGGCAGAGTTTCTCTCTGTTTCTCTTCATGAGATCAACCAGAAAGTTGCAGAGGTGGAAGCCATGGATGTGGAGGAAGATCCATCAATGGGAGTAGAAAAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGCTGAGGCTTCCATTGGTGAAGCAAGTCAAGCTCCAGCCATTGATGCTCATAAAGAAGAACTTGAAGAATTGGTGGTGACAACAAGACAGCCAAATTCAGATCTTCATCAAGTAGAGATTTCAATTGGGACAGATATTCCCGACCGCGAACCGATCGATGAGATTCAAACTCAAACCGACCTTCCTCCGCATCCCGACGTACAAGAAGATCCTTCCCCAAGTTCATCATTGGAAGTTGACAATATGCAAGATTCTAACATAGCTGAGAAATCTGAGGAAGCCGAGGAAGTTAAGGAAGCCGAGGAAGCTGAGGAAGCTAAAGAAGAGGAAGAGTTCAAGATCTTGTCCGTGGAAACGAGTTCTCAACCTTCAGACAATCACAAACCGTCAAGTTCTGAGGTCAATGAGAATGAGGAAGAAGATAAAGTTCCTGATATTCCTGATACACCCACTTCAATGGATAGTCTCCACCAGCTACACAAGAAACTGCTATTACTAGACAGAAAAGAATCTGGAACCGAAGAGTCGTTGGATGGAAGCGTCATAAGTGAGACCGAAGGTGGGGATGGAGTGTTGACTCTTGAGAAATTGAAGTCGGCGTTGAGAACCGAAAGAAAAGCTTTGAATGCTTTATATACAGAGCTAGAAGAAGAGAGAAGTGCTTCAGCTATAGCAGCCAACCAGACAATGGCAATGATAAATAGACTTCAAGAGGAGAAAGCAAGTATGCAAATGGAAGCTTTGCAGTACCAGAGAATGATGGAGGAGCAATCTGAGTATGACCAGGAAGCTTTGCAGCTTTTGAATGAGCTTGTGGTAAAGAGGGAAAAGGAAAAGCAAGAGCTCGAGAAAGAAATCGAAGTTTACCGAAAAAAGCTTCAAGATTATGAAGCCAAAGAGAAAATAGCATTGTTAAGGATCAGAAAAGAAGGGAGCATCCGAAGTAGAAATTCCTCAGTTTCTTGTAGCAATGCCGATGATAGCGATGGGCTATCAATCGATTTGAACACCGAGGCAAAGAAAGACGAAGATTTCTTTTCTAACCAAGAAACAGAGAATCAAAACACCCCGGCTGAGGCAGTCCTTTATTTGGAAGAAACCTTGGCAAACTTTGAGGAAGAAAGGCTGTCCATTCTAGAGGAACTGAAGATGTTGGAAGAGAAGCTCTTCACCCTGAGTGATGAAGAACAACAATTTGAAGACATTGACCATTATTGTGAACAAAATGGGAATGGCTACCATAAGAACACGGATTACGCTACAGAAACAAATGGATTCGAAAACGGCCATAATGCCAAGGAAATGAATGGAAAACATTATCCAGAGAGGAGAGTGATGAGCACGAAAGCCAAAAGACTTCTTCCTCTTTTCGACGATGTAGTCGATGCAGATGTTGTTGAAGATGTAACAAACGGAGAAGAACAAGGGTTCGACTCCGTTTCCATGCAGAAGTCTTTAGACAACAAATTCGACACAGAATTCAGGAGGGTTGCTGTTGAGGAAGAGGTTGATCACGTCTACGAGAGATTACAAGCACTCGAAGCAGATAGGGAGTTTCTAAAACATTGCATTGGCTCCCTAAGAAAAGGAGACAAAGGCATAGAGCTTCTCCAAGAAATCTTACAGCATCTCCGCGATCTAAGGAGCGTCGATCTTCAGTTGAAGAACATGGGAGACAGTGTCGTAGCATGA 2895 42.83 MAANKFATILHRNSNKITLILVYALLEWVLIFLLLLHGLFSYLIVKFAEWFGLKRPCLWCSRVDHVFEPERKHSYRDLLCEAHAMEISNLGYCSNHRKLLEFRDLCEDCSSSSKSHEFYQIPKSFPFFGDEKEDFRSCSCCGETLKNRLFSPCILIKPNWGDLDYTQKGNLISEAETDEIHVSQSEDIIGNREISVVSGGEEAEKNSTCSVCGCGCKDSAVHEDDDDRAELVAEKDGDFLELAEDLTTCNQESVQVCCEKEDELPETIPHHLEFYIDRGDDRRLIPVDLIDFSAPDDDDDNNNSNILSQVKDEEQEQEQEQEDCGNEDVVLDFGSHFENQRHGVTEDWEVISGERLAEFLSVSLHEINQKVAEVEAMDVEEDPSMGVEKEEEKEEEEEEEEAEASIGEASQAPAIDAHKEELEELVVTTRQPNSDLHQVEISIGTDIPDREPIDEIQTQTDLPPHPDVQEDPSPSSSLEVDNMQDSNIAEKSEEAEEVKEAEEAEEAKEEEEFKILSVETSSQPSDNHKPSSSEVNENEEEDKVPDIPDTPTSMDSLHQLHKKLLLLDRKESGTEESLDGSVISETEGGDGVLTLEKLKSALRTERKALNALYTELEEERSASAIAANQTMAMINRLQEEKASMQMEALQYQRMMEEQSEYDQEALQLLNELVVKREKEKQELEKEIEVYRKKLQDYEAKEKIALLRIRKEGSIRSRNSSVSCSNADDSDGLSIDLNTEAKKDEDFFSNQETENQNTPAEAVLYLEETLANFEEERLSILEELKMLEEKLFTLSDEEQQFEDIDHYCEQNGNGYHKNTDYATETNGFENGHNAKEMNGKHYPERRVMSTKAKRLLPLFDDVVDADVVEDVTNGEEQGFDSVSMQKSLDNKFDTEFRRVAVEEEVDHVYERLQALEADREFLKHCIGSLRKGDKGIELLQEILQHLRDLRSVDLQLKNMGDSVVA 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7556365 7560942 + Lsi09G006700.1 Lsi09g00670 670283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00670 964 MobiDBLite consensus disorder prediction 471 485 - -
Lsi09g00670 964 Coils Coil 769 789 - -
Lsi09g00670 964 MobiDBLite consensus disorder prediction 375 554 - -
Lsi09g00670 964 PANTHER MYOSIN-BINDING PROTEIN 3 1 960 - -
Lsi09g00670 964 Coils Coil 627 700 - -
Lsi09g00670 964 ProSiteProfiles GTD-binding domain profile. 593 691 IPR007656 -
Lsi09g00670 964 PANTHER MYOSIN-BINDING PROTEIN 2 1 960 IPR039306 GO:0017022
Lsi09g00670 964 Coils Coil 595 619 - -
Lsi09g00670 964 Coils Coil 385 412 - -
Lsi09g00670 964 Coils Coil 303 327 - -
Lsi09g00670 964 MobiDBLite consensus disorder prediction 517 531 - -
Lsi09g00670 964 MobiDBLite consensus disorder prediction 378 405 - -
Lsi09g00670 964 Pfam Zein-binding 597 687 IPR007656 -
Lsi09g00670 964 Coils Coil 488 519 - -
Lsi09g00670 964 Coils Coil 897 917 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00670 - - - csv:101220314 1553.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00980 Lsi-Chr3:18912155 Lsi09g00670 Lsi-Chr9:7556365 1.53E-12 dispersed
Lsi05g00980 Lsi-Chr5:17114369 Lsi09g00670 Lsi-Chr9:7556365 5.35E-16 dispersed
Lsi05g01844 Lsi-Chr5:25693622 Lsi09g00670 Lsi-Chr9:7556365 2.66E-18 dispersed
Lsi06g01075 Lsi-Chr6:21000320 Lsi09g00670 Lsi-Chr9:7556365 1.73E-13 dispersed
Lsi09g00670 Lsi-Chr9:7556365 Lsi11g00421 Lsi-Chr11:4458178 4.33E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00670 Lsi_Chr09 FPKM 2.469675 2.328411 2.411344 2.615586 3.988649 3.569755 4.451746 4.097595 4.261115 4.975274