Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00671 ATGGCTACCGACGATCAACTCAACAACCCTCCACAACCACCTCCCCCTGCTCCCTCTCTCCCCCACTACCCCGAGATGATTATGACAGCGATCGAATCTCTAAACGACAAAAACGGAGTGAGCAAATCGGCGATTACTAAGCAAATCGAGTCCACATACGGCGATCTGCCCCCTGCTTTCACTACGCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCCAAGCGTGGCCGTGGTCGTCCTCCAAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCGCCACGCCCACGTGGCCGTCCTCCCAAACCCAAAGATCCATTCGCTCCCATTTCACAGCCTAAGAAGAAAACCACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCGAAACCGGCGCCGACCTCTGCTCCAGTCGCCGGCCCTCCCAGAGGTAGAGGACGGCCGCCGAAGGTAAAGCCGGCCGTCGCCCCTGTTGGTTGTTGA 558 58.6 MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7578047 7579271 + Lsi09G006710.1 Lsi09g00671 670284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00671 185 PANTHER HISTONE H1 1 183 - -
Lsi09g00671 185 SMART h15plus2 17 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lsi09g00671 185 Pfam linker histone H1 and H5 family 21 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lsi09g00671 185 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Lsi09g00671 185 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Lsi09g00671 185 SMART AT_hook_2 94 106 IPR017956 GO:0003677
Lsi09g00671 185 SMART AT_hook_2 167 179 IPR017956 GO:0003677
Lsi09g00671 185 MobiDBLite consensus disorder prediction 149 173 - -
Lsi09g00671 185 Gene3D - 16 97 IPR036388 -
Lsi09g00671 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 19 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lsi09g00671 185 PRINTS AT-hook-like domain signature 94 104 IPR017956 GO:0003677
Lsi09g00671 185 PRINTS AT-hook-like domain signature 114 125 IPR017956 GO:0003677
Lsi09g00671 185 PRINTS AT-hook-like domain signature 142 152 IPR017956 GO:0003677
Lsi09g00671 185 PANTHER HMG-Y-RELATED PROTEIN A 1 183 IPR031059 GO:0003677|GO:0005634
Lsi09g00671 185 MobiDBLite consensus disorder prediction 1 23 - -
Lsi09g00671 185 MobiDBLite consensus disorder prediction 8 22 - -
Lsi09g00671 185 MobiDBLite consensus disorder prediction 83 185 - -
Lsi09g00671 185 SUPERFAMILY Winged helix DNA-binding domain 15 95 IPR036390 -
Lsi09g00671 185 MobiDBLite consensus disorder prediction 102 130 - -
Lsi09g00671 185 PRINTS High mobility group protein (HMGY) signature 92 104 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lsi09g00671 185 PRINTS High mobility group protein (HMGY) signature 107 118 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lsi09g00671 185 PRINTS High mobility group protein (HMGY) signature 118 129 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lsi09g00671 185 PRINTS High mobility group protein (HMGY) signature 133 152 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00671 - - - csv:101218644 215.312
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00358 Lsi-Chr5:4541469 Lsi09g00671 Lsi-Chr9:7578047 2.40E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g463 . . . . . . . . . . . . . . . . Cpe01g01840 . . . . . . . . . . . . . . Cone13ag0745 . Cone6ag0385 Cone9ag0412 . Csa05g02012 . . . . . . . . . . . . Cmo15g01006 . Cma15g00964 . Car15g00911 Cpe13g00360 . Bhi12g00922 . . . . . . Cla01g00621 Cam01g0649 Cec01g0642 Cco01g0667 Clacu01g0637 Cmu01g0611 Cre09g1891 Lsi09g00671 . Chy09g00839 Cme09g01371
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001668 2 2 1 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 1 2 2 4 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00671 Lsi_Chr09 FPKM 12.197369 10.653794 16.522905 12.595732 7.899423 10.183032 5.798496 6.223819 7.16951 6.519619