Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00673 ATGAAAATGCTGCATTCTCTTCTACTCTTTTCATTACTAGTCATCATCCATGGCAAAAGCTTCAATAATTTCATGTCTTGCTCCCAAACCCCTTATCCTGACCTTTGCTTCCATTACATAAACCCGAACGATGACGTATCGACTGTCAACATTGATGAAACTTCTCTCATCACTCGCTTTGAAAACTTGGCCATTCGAGCCACTTTGAACCAAGCCATGGTGGTCCATGACCATCTTCGCTCCACCATGGATCTGGATTCATTTGATAACGACGACAAAACTAAATTTGCTTTAATCGACTGTTTAGAGCTCTATGAGGATTCGATCATCGAACTCAATCATTCGACGATCAATCCCATGAGTGTCAATTTGATTGACCACTCGACATTGCTAAGTGCTTCATTAGCGAACTATCAAACATGTCAGGAAGGATTTCAAGATTTCGGATTTTCATTTGATGATTCGAGTAATTTCTTTTTTCCATTTCAAATTTTGAGCAACTTCTCAAAATTGGTCAGCAATTCTCTCGCCATCACGAAGGCTACGGCAGTGGCCGCCACTACTTCCTCCACTTCCGGTGGCCGGCGGTTGCTAGGTGGCTCGTTTCCTGAGTGGGTATACGATGATGATAGGATGCTTCTTCAGGGCGCGGTTGGAAATCGCGTGGATATGGTGGTGGCCCAAGATGGAAGCGGCGATTTTAGGACCATATCAGAGGCGGTGGCGGCCGTGGAGGAGGCAAGGAAGGGAAGTGAAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTAAGAAGAGCATGAAGAATATAATGATGATTGGAGATGGAATGGATAGGACGATTGTCACAGCCATGAAGAACGTCCAAGATGGATCAACCACTTTCCGATCAGCCACTTTTGCGGTGGCTGGCGAAGGATTCATCGCCAAAGACATGACGTTCGAGAACACGGCAGGGCCGGAGAAACACCAAGCCGTCGCACTCCGATCTAACGCCGATCGCTCAATTTTCTACCGATGTAGCTTTAACGGCTACCAAGACACTCTATACGCCCACTCCAATCGCCAATTCTACCGTGAATGCCACATTTACGGAACTGTCGACTTCATTTTCGGCGACGGTGTCGCTGTTTTTCAAAACTGCAACATCTTCGTTAGAAAGCCGATGATGAACCAGAAAAACACCATCACGGCGCAGGCGAGGTCCGACCCGAATGAGAACAGCGGGTTTGTGATCCACAATTCCGTCATTGGAGCAGCGCCGGACTTGAAGCCGGTGGAGGGTTTGTACGGAACTTATTTGGGGAGGCCGTGGAAGGCGTATTCGAGGACGGTGGTAATGAGGAGTTTTTTGGACGGTCTGATTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGGACGGTTTATTATGGCGAGTTTATGAACACTGGCGGTGGAGCAAATACGAAAGGGAGGGTGCAGTGGCCGGGATACCATGTGTTGACGAGTACGGCGGAGGCCGAGAGGTTTACGGTGGAGAGTTTCTTGGAAGGAGGAGATTGGCTTCCGGCCACCGGAGTGCCATTTGCAAATGGGCTATGA 1611 48.11 MKMLHSLLLFSLLVIIHGKSFNNFMSCSQTPYPDLCFHYINPNDDVSTVNIDETSLITRFENLAIRATLNQAMVVHDHLRSTMDLDSFDNDDKTKFALIDCLELYEDSIIELNHSTINPMSVNLIDHSTLLSASLANYQTCQEGFQDFGFSFDDSSNFFFPFQILSNFSKLVSNSLAITKATAVAATTSSTSGGRRLLGGSFPEWVYDDDRMLLQGAVGNRVDMVVAQDGSGDFRTISEAVAAVEEARKGSERFVIYVKGGIYKENVVIKKSMKNIMMIGDGMDRTIVTAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSIFYRCSFNGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGVAVFQNCNIFVRKPMMNQKNTITAQARSDPNENSGFVIHNSVIGAAPDLKPVEGLYGTYLGRPWKAYSRTVVMRSFLDGLIEPAGWLPWAGDFGLRTVYYGEFMNTGGGANTKGRVQWPGYHVLTSTAEAERFTVESFLEGGDWLPATGVPFANGL 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7603919 7606881 - Lsi09G006730.1 Lsi09g00673 670286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00673 536 SMART PMEI_2 16 178 IPR006501 GO:0004857
Lsi09g00673 536 SUPERFAMILY Pectin lyase-like 222 534 IPR011050 -
Lsi09g00673 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 180 IPR035513 -
Lsi09g00673 536 Gene3D - 220 536 IPR012334 -
Lsi09g00673 536 CDD PMEI-like_3 26 176 - -
Lsi09g00673 536 ProSitePatterns Pectinesterase signature 2. 369 378 IPR033131 -
Lsi09g00673 536 PANTHER PECTINESTERASE 20 535 - -
Lsi09g00673 536 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 180 IPR006501 GO:0004857
Lsi09g00673 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 182 IPR035513 -
Lsi09g00673 536 Pfam Pectinesterase 223 521 IPR000070 GO:0030599|GO:0042545
Lsi09g00673 536 Pfam Plant invertase/pectin methylesterase inhibitor 26 178 IPR006501 GO:0004857
Lsi09g00673 536 ProSitePatterns Pectinesterase signature 1. 250 269 IPR018040 -
Lsi09g00673 536 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01943 Lsi-Chr5:26597113 Lsi09g00673 Lsi-Chr9:7603919 1.29E-140 dispersed
Lsi07g01030 Lsi-Chr7:15624554 Lsi09g00673 Lsi-Chr9:7603919 1.32E-141 dispersed
Lsi05g00647 Lsi-Chr5:8220509 Lsi09g00673 Lsi-Chr9:7603919 3.57E-151 transposed
Lsi05g01321 Lsi-Chr5:20974152 Lsi09g00673 Lsi-Chr9:7603919 2.26E-47 transposed
Lsi09g00498 Lsi-Chr9:5184085 Lsi09g00673 Lsi-Chr9:7603919 1.70E-162 transposed
Lsi04g00186 Lsi-Chr4:1991203 Lsi09g00673 Lsi-Chr9:7603919 1.10E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00673 - K01051 csv:101219120 874.774