Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00676 ATGCCGTTTCCTCTGCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGTCTTGCTCTTGTCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCATTGCATTGTGGGAACTAGTTTTGGGTCCTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTATATCCTTCTCTTCAAAACAGCAGTGGAGCCTCTATCTCGTGGAACATCGTTGAAAGATTGA 279 44.09 MPFPLQNRAFSCARELLDSMPGKLDSKRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGTSLKD 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7665027 7667887 + Lsi09G006760.1 Lsi09g00676 670289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00676 92 SMART Dynein_light_2 1 79 IPR001372 GO:0007017|GO:0030286
Lsi09g00676 92 Pfam Dynein light chain type 1 1 79 IPR001372 GO:0007017|GO:0030286
Lsi09g00676 92 PANTHER DYNEIN LIGHT CHAIN 1 85 - -
Lsi09g00676 92 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1 80 IPR037177 GO:0007017|GO:0030286
Lsi09g00676 92 SUPERFAMILY DLC 1 79 IPR037177 GO:0007017|GO:0030286
Lsi09g00676 92 PANTHER DYNEIN LIGHT CHAIN 1 85 IPR001372 GO:0007017|GO:0030286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00676 K10418 DYNLL; dynein light chain LC8-type - csv:101219841 183.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00861 Lsi-Chr6:18135539 Lsi09g00676 Lsi-Chr9:7665027 7.07E-17 dispersed
Lsi06g01502 Lsi-Chr6:25464118 Lsi09g00676 Lsi-Chr9:7665027 6.55E-31 dispersed
Lsi09g00676 Lsi-Chr9:7665027 Lsi02g02797 Lsi-Chr2:34192530 9.54E-13 dispersed
Lsi09g00676 Lsi-Chr9:7665027 Lsi02g00336 Lsi-Chr2:2871876 1.75E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g476 Blo01g00767 Blo16g00740 Bda01g01803 Bda11g00179 Bpe13g01017 . . . . . . . . Car04g00094 . . Cpe01g01836 . . . . . . . . . . . . . . . . Cone6ag0379 Cone9ag0408 . Csa05g02007 . . . . . Bda11g00179 . Bpe02g01979 Bma01g00479 Bma06g01124 . . Cmo15g01017 . . . Car15g00917 Cpe13g00356 . Bhi12g00928 . . . . . . Cla01g00625 Cam01g0654 Cec01g0646 Cco01g0671 Clacu01g0642 Cmu01g0617 Cre09g1887 Lsi09g00676 . Chy09g00834 Cme09g01366
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007497 2 1 2 2 2 1 2 0 0 1 0 1 1 1 1 1 1 2 2 0 1 1 1 1 1 1 1 1 1 3 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00676 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0