Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00677 ATGACCAGACCAGAATCATCCTCGCCCTTCAATCGTTCTCCTCCATTCGACATGTCTGAGAATCAGGAACCACCCAATCCGGCGGCTGCCGCTGGCACTTCGTCTCCCGGCGTTCGAATCGAAGCAGGGCCACCGCACGAGGCGTTATTTCTTGTACTGAGTTATCTTCCTCTCTTTGAGCTTCTTTCCATGAGCGCAGTCTGCGTATCGCTGAGAGACGCAGTGGAACATGATGTGTTGCCGTGGCTTCACATCGTCATCGATCGGCGCTTGAGCTCCCGGCTATCCGATTACACTCTAGGGAGAATCGCCCAGAAGGCCGGTGGTCGCCTTAGAACTTTGGCTTTGATCAACTGTTTCAAGATTTCAGATTCTGGACTTCACGAAGTTGTTGAGAAGAATCCTCTTCTCACCAAGCTTTATGTACCTGGATGCACGAGTTTGACTCCTGAGGGGGTGGTTAGGGCAGTGAGGACTCTGTCTCAACATTCTCACAATTTGAAGAGCCTAATGATTGGTGGCATTTACCACATAGAGAACGAACACCTTGAAGTCCTCAAATGCTATCTTCTCGAAAACCGATCGCAGCAGCAGCAGGAGCGGCAACAACATCATCACCTGTACCATGAGCGCATTGACCGATCGAAGTTGTTGAGTAACGAATTCCAGCCAGTGATTGATGTACAAATCTGCCCAAAATGCTTTGACATAAGAAGTGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCGAGAGGAGCAATTACTGGCAGATTGTCGGGGTTGCATTTGTTGCGTTCCAAGGTGTGAAGAATGCGGTGGATGCGTCGATGATGATGAAATAGAAGAGGCTGTATGTGCAGGGCTGCAACAAGATATGCTTTGTTTGAACAGGGAAATGTACATTTTTGCTGTATAA 921 48.32 MTRPESSSPFNRSPPFDMSENQEPPNPAAAAGTSSPGVRIEAGPPHEALFLVLSYLPLFELLSMSAVCVSLRDAVEHDVLPWLHIVIDRRLSSRLSDYTLGRIAQKAGGRLRTLALINCFKISDSGLHEVVEKNPLLTKLYVPGCTSLTPEGVVRAVRTLSQHSHNLKSLMIGGIYHIENEHLEVLKCYLLENRSQQQQERQQHHHLYHERIDRSKLLSNEFQPVIDVQICPKCFDIRSVYDCSRERCKIKREEQLLADCRGCICCVPRCEECGGCVDDDEIEEAVCAGLQQDMLCLNREMYIFAV 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7669591 7671649 + Lsi09G006770.1 Lsi09g00677 670290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00677 306 MobiDBLite consensus disorder prediction 1 19 - -
Lsi09g00677 306 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 260 271 IPR017900 -
Lsi09g00677 306 Pfam F-box domain 45 80 IPR001810 GO:0005515
Lsi09g00677 306 SUPERFAMILY F-box domain 45 93 IPR036047 GO:0005515
Lsi09g00677 306 Gene3D Ribonuclease Inhibitor 44 193 IPR032675 -
Lsi09g00677 306 PANTHER F-BOX PROTEIN SKIP28 32 297 - -
Lsi09g00677 306 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 32 297 - -
Lsi09g00677 306 MobiDBLite consensus disorder prediction 1 38 - -
Lsi09g00677 306 SUPERFAMILY RNI-like 90 197 - -
Lsi09g00677 306 SMART LRR_CC_2 134 159 IPR006553 -
Lsi09g00677 306 SMART LRR_CC_2 108 133 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00677 - - - bhj:120092447 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00650 Lsi-Chr4:5946555 Lsi09g00677 Lsi-Chr9:7669591 1.42E-41 dispersed
Lsi09g00677 Lsi-Chr9:7669591 Lsi08g01614 Lsi-Chr8:24076767 1.74E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g477 Blo01g00768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0378 Cone9ag0407 . . . . . . . . . Bpe02g01978 Bma01g00480 . . . Cmo15g01018 . Cma15g00971 . Car15g00918 Cpe13g00355 . Bhi12g00929 . . . . . . Cla01g00626 Cam01g0655 Cec01g0647 Cco01g0672 Clacu01g0643 Cmu01g0618 Cre09g1886 Lsi09g00677 . Chy09g00833 Cme09g01365
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013070 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00677 Lsi_Chr09 FPKM 5.409513 6.720951 28.846149 30.149025 274.730652 294.923035 277.482483 29.91493 29.841087 31.089933