Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00681 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGTTGTCCTCATCTTCTTCTTCTTCAAGTTTTAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGTCCATTGCAGAATCCCATTTCAAAGTCGAAGCTGGTTAATCCACCTTCAGATTCCACGGCAAATTCTAAGCCCCCGGTTGCGAATTCGATTACCACTGGTCAAAACAGGTCAGACCTGTCGAATAAATCGAACCCAGATCGTAAACCGGAGGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCAACAATAGTACAGCCAAGGGACCAGAAGATCTGCCTACGAGTGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGGTACTTTCTTATCAGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTCAAGCTTTTGAGGAACATAGTTCGGGAGCCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAATCATGGACGTTCCAACAGAGGAAGAAATTAACCTATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGCATCTGAGCTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACATTGCAGCCAACATTGAACTACCAGACTCTTTCTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAACAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACTAGAACAGTTATCAGAATTCAATTTCCCGATGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCAACAAGTGCTCTATATGAGTTTGTGTGCACAGCACTGAAAGAACCCGGTTTGGAATTCGAGTTGATACATCCTATCGGTGTTAAACGGCGTACAATCGCTCATTTTCCTGCAGTAGGAGAGAGATTTAAAACACTAGATGATGAGGAGTTAGTCCCCTCAGCTCTGGTCAAGTTTAGACCCATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTGACGAACTCCTTGAGATAATTGAACCACTCGTTAGCGGTTCAGCTGTGGCTCCTCCTGCACAAGTTTAA 1422 43.25 MGDVKDKVKGFMKRFNNTLSSSSSSSSFKGQGRVLGSSSSGSTSSMPTRPLQNPISKSKLVNPPSDSTANSKPPVANSITTGQNRSDLSNKSNPDRKPEDGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHVDSCVNNSTAKGPEDLPTSDAESRSELEACVGTFLSGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWAIMDVPTEEEINLLSKVIDSIDRPKLDEQQKKASTASELIEPKKVDRQIRVFFAVPENIAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTSALYEFVCTALKEPGLEFELIHPIGVKRRTIAHFPAVGERFKTLDDEELVPSALVKFRPIETDSVVFTGLRDELLEIIEPLVSGSAVAPPAQV 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7727162 7731227 - Lsi09G006810.1 Lsi09g00681 670294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00681 473 Gene3D - 347 439 - -
Lsi09g00681 473 ProSiteProfiles UBX domain profile. 353 437 IPR001012 GO:0005515
Lsi09g00681 473 SMART PGNneu 184 251 - -
Lsi09g00681 473 Pfam PUB domain 183 254 IPR018997 -
Lsi09g00681 473 MobiDBLite consensus disorder prediction 15 109 - -
Lsi09g00681 473 CDD UBX_UBXN6 358 438 - -
Lsi09g00681 473 Pfam UBX domain 354 410 IPR001012 GO:0005515
Lsi09g00681 473 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 463 - -
Lsi09g00681 473 SUPERFAMILY PUG domain-like 182 245 IPR036339 -
Lsi09g00681 473 SUPERFAMILY Ubiquitin-like 324 437 IPR029071 -
Lsi09g00681 473 Gene3D - 178 267 - -
Lsi09g00681 473 MobiDBLite consensus disorder prediction 15 89 - -
Lsi09g00681 473 CDD PUB 171 267 - -
Lsi09g00681 473 SMART c2hc_5 123 147 IPR006642 GO:0003677|GO:0006281
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00681 Lsi-Chr9:7727162 Lsi11g00727 Lsi-Chr11:7908560 9.44E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25890 PF00789 UBX 8.20E-05 CL0072 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00681 K14011 - csv:101209321 837.025