Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00684 ATGGATAAAATCTTCCGGAGAATGAATATCAATACTTCAACTCATGAATTACTCAATTCCACTCTGAGAAGTCCTAAATTTCTCACTCCGCTTCTACTCTTTCATGGTTCCAACAAAAATATGGACTCAGATTCGGAGTTGGAACTCGACGATTCTGACAAGCTCGGTTATCGGTCTTCTGTACCCAGTTCTCGAAGAAGCTGGATTTCTGAAGAACAGGTTGATCGTAGAGAAATTTCAAAAGCAAGGGAGTTGAAGGTTCAGATAGAACCATGGCCGGAGTGGGTGGACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTTGAAGGAGACAGAGGCCCATTTCTGAATGCTGAATTGGGTGCAAAAGATTTCAATCATATTCGGACTGCTTGTCTTGATTTTGCAAGGGATCGGTTTAACCTTATACGGTTCTTGTCCAGGAAAGAGTTACAGGTGATTGCAGGATGTGGATGCCCAAACACAGATAGGAAAGTTGTGAACTCAGGGAAGCGTCTCAGAGCATATATGGGCATTGATGAGGGAAATGTCTGCATTTCTTGCAACCTGCGGGGAGAATGCGAGAGGGCGTATGCAAAGGCATGTGGAGATGGAGGAGGTCGGTCCGTGGATGTCATGCGCGTTTTGTTATTTTATGGGCTTGATCACAGCTCTGCTATGGTGGAGAACAGACCATGCCTGAACAAGAAGGCCAATGACTCTGTTAGAAAGCTGTTGAAAGATATTGTTGAATATAGTGCAGGAGAACGTGAATCTGATCTTCTAAAGTCTAACGAGGCTACTTCAGCAGAAAATCATGAGACTAGTGCTTCAGTGATACGAGGCGACTGGCATTGTCCAGAATGCAACTTTTTCAACTTTTCTAGAAACATCAAGTGCTTGCGCTGTGGTAGTATATCCCTCGAGAGACTTCGGAAACTAAACGAGGATCAAGTTGATCTTCCGTTGAAGAAGGGCGACTGGATTTGCGAAAAGTGTAATTTCTTGAACTTTGCTAAGAATTCAACATGTTTGCAATGCAAAGAGAAGCCTTTGAATCGACAGCTGAATCAAGGGGAGTGGGAATGCGAATCGTGCAACTATATCAATTTTAGAAAGAATACACTATGCTTGAAGTGTGATCACCGACGGCCGAAAGCACTAAATACTCGAAATATTTCTGCTGGACCTATAGCTGAGAATGGAAACTACAGTTTCAGTAAGCCTAAATCCTCCTCTGGTAAAGTTGGTAATAATGCAAGTAGAAAAAATGATGGCTGTATGTGGAGATTTGGTGAAAATGAGGGTGAAGATGATTCTGCATCTATGGATTTTCCTATTGCCGGTTCTTATGGAAGTGCAGAAAGACAAGAAAGAAGGAAAGTGGAGATGTTAGAGAGGAGAAAAAGCATGGAAAATGCAATTGATAAAGAAGAAGATCTAATCTTGAGATCTGACAATATTGAAAGAAGATTTGAGTTTGTTGAATCTACTGATGATGAAGACATCATCGAATGA 1518 41.7 MDKIFRRMNINTSTHELLNSTLRSPKFLTPLLLFHGSNKNMDSDSELELDDSDKLGYRSSVPSSRRSWISEEQVDRREISKARELKVQIEPWPEWVDFMECLSKKGYFEGDRGPFLNAELGAKDFNHIRTACLDFARDRFNLIRFLSRKELQVIAGCGCPNTDRKVVNSGKRLRAYMGIDEGNVCISCNLRGECERAYAKACGDGGGRSVDVMRVLLFYGLDHSSAMVENRPCLNKKANDSVRKLLKDIVEYSAGERESDLLKSNEATSAENHETSASVIRGDWHCPECNFFNFSRNIKCLRCGSISLERLRKLNEDQVDLPLKKGDWICEKCNFLNFAKNSTCLQCKEKPLNRQLNQGEWECESCNYINFRKNTLCLKCDHRRPKALNTRNISAGPIAENGNYSFSKPKSSSGKVGNNASRKNDGCMWRFGENEGEDDSASMDFPIAGSYGSAERQERRKVEMLERRKSMENAIDKEEDLILRSDNIERRFEFVESTDDEDIIE 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7756385 7765245 - Lsi09G006840.1 Lsi09g00684 670297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00684 505 ProSiteProfiles Zinc finger RanBP2 type profile. 324 347 IPR001876 -
Lsi09g00684 505 PANTHER ZINC FINGER PROTEIN 281 303 - -
Lsi09g00684 505 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 301 504 - -
Lsi09g00684 505 Coils Coil 454 481 - -
Lsi09g00684 505 SUPERFAMILY Ran binding protein zinc finger-like 277 306 IPR036443 -
Lsi09g00684 505 ProSitePatterns Zinc finger RanBP2-type signature. 284 303 IPR001876 -
Lsi09g00684 505 Gene3D - 352 387 - -
Lsi09g00684 505 Gene3D - 273 306 - -
Lsi09g00684 505 Gene3D - 316 351 - -
Lsi09g00684 505 ProSiteProfiles Zinc finger RanBP2 type profile. 280 309 IPR001876 -
Lsi09g00684 505 ProSiteProfiles Zinc finger RanBP2 type profile. 357 386 IPR001876 -
Lsi09g00684 505 MobiDBLite consensus disorder prediction 399 421 - -
Lsi09g00684 505 ProSitePatterns Zinc finger RanBP2-type signature. 361 380 IPR001876 -
Lsi09g00684 505 PANTHER ZINC FINGER PROTEIN 3 269 - -
Lsi09g00684 505 ProSitePatterns Zinc finger RanBP2-type signature. 328 347 IPR001876 -
Lsi09g00684 505 PANTHER ZINC FINGER PROTEIN 301 504 - -
Lsi09g00684 505 SUPERFAMILY Ran binding protein zinc finger-like 353 386 IPR036443 -
Lsi09g00684 505 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 3 269 - -
Lsi09g00684 505 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 281 303 - -
Lsi09g00684 505 Pfam Zn-finger in Ran binding protein and others 282 305 IPR001876 -
Lsi09g00684 505 Pfam Zn-finger in Ran binding protein and others 359 381 IPR001876 -
Lsi09g00684 505 Pfam Zn-finger in Ran binding protein and others 324 348 IPR001876 -
Lsi09g00684 505 MobiDBLite consensus disorder prediction 399 420 - -
Lsi09g00684 505 SUPERFAMILY Ran binding protein zinc finger-like 319 349 IPR036443 -
Lsi09g00684 505 SMART zf_4 359 383 IPR001876 -
Lsi09g00684 505 SMART zf_4 282 306 IPR001876 -
Lsi09g00684 505 SMART zf_4 326 350 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00684 - - - cmo:103483035 863.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01993 Lsi-Chr4:27032680 Lsi09g00684 Lsi-Chr9:7756385 5.28E-12 dispersed
Lsi08g01180 Lsi-Chr8:20409473 Lsi09g00684 Lsi-Chr9:7756385 4.15E-06 dispersed
Lsi09g00684 Lsi-Chr9:7756385 Lsi11g00571 Lsi-Chr11:6047397 3.06E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00684 Lsi_Chr09 FPKM 4.570259 4.768759 2.758372 3.061523 31.96946 29.891226 33.0858 1.688437 1.372821 2.076639