Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi09g00690 | ATGTCTTCCCAATCCTTTCCTCCTTCCATGGAGCCTCCCGCCCAACAGACCCCTCTCTTACCCTCCCGTCAGCCCTCCAACACTGACGGCTCCACTTCCCCCATCGGCCCTCTCGCCCTTCTCTTGGGTCGCGCCACTGGCCGCCGTGGAACTTCTATGCTGGTTCGGGAGACGGCGGCACGTGAACTTGAAGAGCGGCGCGTCGATTGGGGCTATTCCAAGCCTGTGGTAGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCGCTTGGTGTGCTTATTCACTCCGCCGATGAAAAACCCAATACCCCAATTCGGCTTTGGATTGTAGTTTATGCGGCTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAGTTCAGAAGGAGGAATGCGAGGAGGGCTACGGATATGGAGACGCAGCAACAGCAGCAGTATGACGGATATGTAACTAATGAAAGCGATGAAGAAGATGGTAGCCCCAGGAATATGTCCGGTGTTACGAAAAGATGTGAGTCAGTGAACACTCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTGGCTGGTGGTAACATCCTCATGCAGAATGCTCCATCTTTATACTGGCTGGCTGTCGTATTCCTGGCATTTGATGTGTTCTTTGCAGTCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAGGTATAGATATCAAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGGTCCCAGTAGAAACTAGCAGTAGATACTTGACGACAGAGCGTGTTCTCTTACGTGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATACGAGGACGGAGCCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGTTGAAGATGAATGCAACCTGTCCTCTGTGCAAGTACAATATTCTAAAAAATTGTGAACCTGTGTAA | 1068 | 48.97 | MSSQSFPPSMEPPAQQTPLLPSRQPSNTDGSTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRVDWGYSKPVVALDITWNLAFVFVSLGVLIHSADEKPNTPIRLWIVVYAAQCLVHAVLVWFEFRRRNARRATDMETQQQQQYDGYVTNESDEEDGSPRNMSGVTKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPRYRYQVSNEPSPGDGLMVPVETSSRYLTTERVLLREDAECCICLSPYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNCEPV | 355 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 7832170 | 7837701 | - | Lsi09G006900.1 | Lsi09g00690 | 670303 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi09g00690 | 355 | ProSiteProfiles | Zinc finger RING-type profile. | 304 | 345 | IPR001841 | - | |
| Lsi09g00690 | 355 | CDD | RING-H2_RNF111_like | 303 | 347 | - | - | |
| Lsi09g00690 | 355 | Pfam | Ring finger domain | 303 | 345 | IPR001841 | - | |
| Lsi09g00690 | 355 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 350 | IPR013083 | - | |
| Lsi09g00690 | 355 | PANTHER | TARGET OF ERK KINASE MPK-1 | 15 | 351 | - | - | |
| Lsi09g00690 | 355 | SMART | ring_2 | 304 | 344 | IPR001841 | - | |
| Lsi09g00690 | 355 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE | 15 | 351 | - | - | |
| Lsi09g00690 | 355 | MobiDBLite | consensus disorder prediction | 138 | 167 | - | - | |
| Lsi09g00690 | 355 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
| Lsi09g00690 | 355 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Lsi09g00690 | 355 | SUPERFAMILY | RING/U-box | 290 | 350 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00564 | Lsi-Chr3:6818230 | Lsi09g00690 | Lsi-Chr9:7832170 | 2.14E-10 | dispersed | |
| Lsi07g01384 | Lsi-Chr7:20105016 | Lsi09g00690 | Lsi-Chr9:7832170 | 1.47E-117 | dispersed | |
| Lsi08g01150 | Lsi-Chr8:20129694 | Lsi09g00690 | Lsi-Chr9:7832170 | 1.19E-06 | dispersed | |
| Lsi09g00690 | Lsi-Chr9:7832170 | Lsi06g00828 | Lsi-Chr6:17610309 | 1.11E-11 | dispersed | |
| Lsi09g00690 | Lsi-Chr9:7832170 | Lsi03g01645 | Lsi-Chr3:27631109 | 1.71E-90 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi09g00690 | - | - | cmo:103504433 | 615.92 |