Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00692 ATGGCTACGATGGAGAGCTTGATCGGTTTAGTCAACCGAATCCAGCGAGCCTGCACTGTCTTGGGAGATCATGGCGGCGAGGGAATGTCCCTCTGGGAAGCTCTTCCTTCCGTCGCCGTCGTGGGAGGACAGAGTTCCGGTAAATCTTCAGTGCTGGAAAGCGTGGTCGGTAGAGACTTTCTTCCTCGTGGATCCGGCATTGTAACGCGAAGACCATTGGTGTTGCAACTTCATAAGACAGATGAAGGACGATCTGAATATGCAGAGTTTCTCCATGCCCCGAAGAAGAAGTTTGCTGACTTTGCTTCTGTCCGTAAAGAAATATCAGATGAGACTGATCGGATTACTGGGAAGTCAAAGCAAATCTCAAACATACCAATTCATTTGAGCATATATTCTCCAAATGTTGTAAACTTAACACTCATAGATCTTCCTGGGTTGACAAAGGTTGCTGTAGATGGACAACCCGAATCTATTGTTGAAGATATTGAAAACATGGTCCGCTCTTATGTTGAGAAACCTAACTGCATTATACTTGCAATTTCTCCTGCTAATCAAGATATTGCAACTTCAGACGCTATAAAGCTTGCAAGGGAAGTTGATCCCTCAGGTACTAATGTAAAGAGGGTTCTTGAAGGAAGATCATACAGGTTGCAGCATCCATGGGTAGGGATTGTAAATCGTTCACAAGCTGATATTAATAAGAACGTAGACATGATTATTGCGCGCAAAAAGGAGCGTGAATATTTTGAGACAAGCCCCGAGTATGGACATCTAGCCCATAAGATGGGCTCAGAATATCTTGCTAAACTTTTGTCCCAGCACTTGGAGAGGGTTATCAGGCAACGGATTCCAAGTATCATTGCCTTGATAAATAAGACAATTGACGAACTGAATGCGGAGTTGGACAGAATTGGCAGACCTATAGCAGTAGACTCGGGGAACAAGGATACAGGAGGCTTATTGATGGTTCAATCAGCTATTTCAAGGGTCCGGCTGAAGCTTCCGTTGATGCTCTACCTCACCGTAGATTTTTTTCGAAAGCTGCATATGGAACCAGACAAAAACCCTAATCCTACCCCAGCAGGGCCAAATGCAGACCGTTATACAGATAACCATTTCAGAAGGATTGGTTCAAATGTGAGTTCTTATATTGGGATGGTCTGTGACACACTGAAAAATTCAATTCCGAAGGCGGTCGTCTACTGTCAAGTTCGAGAGGCCAAGAGATCATTGCTGAACCATTTTTATGTTCAAGTTGGCAAAAGGGAGAAGGAACGGCTTGGTGCTATGTTGGATGAGGATCCAGCACTAATGGAGAGAAGAACAACCATAGCTAAAAGACTCGAGCTTTACAAGTCAGCTCGAGACGAAATCGACTCAGTTGCCTGGAAATGA 1398 44.35 MATMESLIGLVNRIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTDEGRSEYAEFLHAPKKKFADFASVRKEISDETDRITGKSKQISNIPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPSGTNVKRVLEGRSYRLQHPWVGIVNRSQADINKNVDMIIARKKEREYFETSPEYGHLAHKMGSEYLAKLLSQHLERVIRQRIPSIIALINKTIDELNAELDRIGRPIAVDSGNKDTGGLLMVQSAISRVRLKLPLMLYLTVDFFRKLHMEPDKNPNPTPAGPNADRYTDNHFRRIGSNVSSYIGMVCDTLKNSIPKAVVYCQVREAKRSLLNHFYVQVGKREKERLGAMLDEDPALMERRTTIAKRLELYKSARDEIDSVAWK 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7848628 7858331 + Lsi09G006920.1 Lsi09g00692 670305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00692 465 Gene3D - 4 332 IPR027417 -
Lsi09g00692 465 PANTHER DYNAMIN 339 465 IPR022812 -
Lsi09g00692 465 PANTHER DYNAMIN 4 317 IPR022812 -
Lsi09g00692 465 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 285 IPR030381 GO:0005525
Lsi09g00692 465 ProSiteProfiles GED domain profile. 374 465 IPR020850 -
Lsi09g00692 465 Gene3D Dynamin, middle domain 338 442 - -
Lsi09g00692 465 PANTHER BNAA09G45430D PROTEIN 339 465 - -
Lsi09g00692 465 PANTHER BNAA09G45430D PROTEIN 4 317 - -
Lsi09g00692 465 CDD DLP_1 35 285 IPR001401 GO:0003924|GO:0005525
Lsi09g00692 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 293 IPR027417 -
Lsi09g00692 465 SMART dynamin_3 4 236 IPR001401 GO:0003924|GO:0005525
Lsi09g00692 465 Pfam Dynamin family 38 207 IPR045063 -
Lsi09g00692 465 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Lsi09g00692 465 PRINTS Dynamin signature 35 53 IPR022812 -
Lsi09g00692 465 PRINTS Dynamin signature 183 201 IPR022812 -
Lsi09g00692 465 PRINTS Dynamin signature 133 150 IPR022812 -
Lsi09g00692 465 PRINTS Dynamin signature 60 77 IPR022812 -
Lsi09g00692 465 Pfam Dynamin central region 206 315 IPR000375 -
Lsi09g00692 465 Pfam Dynamin GTPase effector domain 370 462 IPR003130 GO:0003924|GO:0005525
Lsi09g00692 465 SMART GED_2 369 462 IPR003130 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00692 - - - csv:101212826 584.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02069 Lsi-Chr4:27847744 Lsi09g00692 Lsi-Chr9:7848628 3.30E-18 dispersed
Lsi09g00692 Lsi-Chr9:7848628 Lsi09g01818 Lsi-Chr9:26987095 2.67E-161 dispersed
Lsi09g00692 Lsi-Chr9:7848628 Lsi05g01898 Lsi-Chr5:26137755 9.05E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g501 . Blo16g00754 . Bda11g00186 Bpe13g01007 . . . . . . . . . . . Cpe01g01825 . . . . . . . . . . . . . . . . Cone6ag0359 Cone9ag0389 . . . . . . . Bda11g00186 . . . Bma06g01131 . . . . . . . . . Bhi12g00950 . . . Hepe02g2616 . . Cla01g00644 Cam01g0671 Cec01g0663 Cco01g0689 Clacu01g0660 Cmu01g0633 Cre09g1872 Lsi09g00692 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00692 Lsi_Chr09 FPKM 23.757286 25.813805 13.773513 12.935412 18.84679 21.738176 24.441689 9.896272 9.677983 12.351461