Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00694 ATGAATTTGAAAGACAAACCGCTACAACAAAACGACATGGGAAAGACAATCGAGATTTACGGGTTCCGGCCAGAGGTGACCGTAGACGAGGTGAAGGAATTTCTCGAGAATCACACCGGAGATGGAACGGTATCGACGGTGAGGATTTCAAAACCCAAAGACGAAAAAGCCCGATTCACATTTGCGACCGTCCGGTTCGGAAGCAAACTGGCAGCCGAGTACATAGTGGCAAAGGCGACAGCGGCGGAGAAGCAGCTGTGGTTCGGAAGCTCGTATTTGAAGGCTAGAGAAGTGGAGAGGGCGGTGGTGGCGCCGGTGAGAGGTGGTGGCGAAATGGAGAGAATGGAAGACGTGAAAGGGCACTTGGGAAGCCTAATTTCGAAGGAAAAAATGAGGGTAATTTGGGAAGGAGAAAATTGGAATGTGGAATTTGGAATTGGAGTTAGGAAATTATGCTTTTATTTGAGTTATGAAGTTGATGACTACAAAATGGAGCTTTCTTTTGAGAATATTTTGAGTGTTGAGCTTCGTTGCCCTCTCAATCAACCTTCCAAAGATGTTGATTTCACTCCATCTTCTTGCATTGGACAATCCTTTGCTCTATGCTTAGAACTTTCTCCTGAACATCACCTTCCTACTTTCTTCCAAACATTGGTCGGCTACAAAGAAACCTATGCTCCATTCATTCTTCAGACAGGTTCTTCTTTCTCTTCCATTTCAAATCTGGTTCCTATCATTACTCCACCCCAAGCGTTTGATATCTCTTATAAAATTTTGTTCAAAATCAATGCCTTAGTCCAACATGGTTATCTTCCTGGACCAACGCTAGATGATGAATTCTTCCGATTGGTCGATCCAAGTAGATTTCGTCCTGACTTTATCGAACATGCCCTAGAAAAACTGTTTAATATGAAGGAATGTTGCTACGAACCACAAAAGTGGCTCAAACATCAGTATCTGTCATTTTATACTTCTAACCAACTTCCATGGAAACATAATATTTCTCTGGATGATGGCCTGGTCTATGTGCATAGAGTTCAAATTACACCGTCTAAAGTGTACTTCCGTGGTCCGGAGGCCAATCTTTCGAATAGAGTAGTCCGTCGTTTTATTGATGATATAGATAATTTCATTCGTGTGTCTTTTGTTGATGAGGAATTGGATAAACTTCATTCCATTGATCTATCTCCGCGTTCATCATCGGCTGAAAGTAGTGCAAGAACTAGAGTTTATGATAGAGTACTATCTGTGTTAAGAAATGGTATTCTCATTGGTGATAAGAAGTTTGAGTTTCTGGCTTTCTCGGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAGGGCCTTAGTGCAGCAGATATCAGAGAGTGGATGGGTGACTTTCGTCAAATAAGGAATGTGGCAAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCATCTAGAAAAACTTTATGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAGGAAGAAAATTATGTATTGTTTTTCTGATGGGATTGGAAAAATATCAAAAACATTGGCTGAGAAGGTTGCTGAAAAATGTGGCTTGATCAGTCATACACCATCTGCCTTCCAGATTCGATATGCTGGATACAAAGGCGTTGTTGCTATTGACCCAACGTCGAAAAAGAAATTGTCATTACGGAAGAGTATGTTGAAGTATATGTCGCTTGATACGCAACTTGATGTTTTGTTATGGAGCAAGTATCAACCTTGTTTTCTTAACCGTCAGGTGATCAACCTTCTGTCAACTCTTGGAATTAAGGATCGTGTTTTTGAGAAAAAACAAAAGGAGGCTATAGAACAATTGGATTCTATTTTAGATGATCCATCAAGAGCATTAGAAGTGTTGGAGTTGATGTCCCCTGGAGAAATGACTAGTATTCTGAAGGAATTGCTTTTGTTTTACAAGCCGAATGAAGAGCCTTTTCTAAATATGATGCTACGAACACTTCGAGCAGATAAATTGTTAGATTTGAGGACTAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCTTGGATGAAACCCGAACACTAGAATATGGGCAGGTGTTTGTCCATTGCTCTGTTCCTGGAAGATCAAGCGAAAGTAATTTTATAGTTAAGGGTAAAGTGGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGTGTGCTCGATGCTGTTGATGTGAAAGCTCTACATCATATGGTGGATTGTGTGGTTTTTCCCCAGAAAGGAAAAAGACCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGTTTGTTGGGATCCGGAGCTGACTTGTATTAAACCAGTTAAACCTATGAGCTACGAGCCTGCACCAACTATGCAGTTGGATCATGATGTCACAATCGAGGAAGTGCAGGAATATTTGGCCAATTACATGGTGAATGATGGTCTTGGAGCCATTGCAAATGCTCACACTGTCTTTGCAGATAAGAAGCCTAAGAAGGCAATGAGTGCCGAGTGCATTAAACTTGCAAAATTGTTCTCTATTGCTGTTGACTTCCCGAAGACTGGTGTGCCAGCAAACTTGCCACGCAATCTTCGTGTCCATGAGTATCCAGATTTCATGGACAAACCCAATAAACCGACTTATGTATCAAATGGTGTTCTGGGGAAGCTTTTTCGAGGAGTGAAGGATGTTTCTTCTGATGTCAACACCCTTGAAATCTTCACTAGGGAAGTTGCTACCAAGTGCTACGATCCAGACATGGAAGTAGATGGCTTTGCAAAGTATTTGAGAGAAGCTTTTGATTACAAAACTAGGTACGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATCAAAACAGAACCTGAATTAGTCAGTGGAAATATCTTGAGAATGGCAAAGTCTTTTGATAAAAGGAATGACTTAGAACAAATTGTCTTTGCCATGAAATCACTAAGAAAAGAGGCCAGGGCTTGGTTCAATGAGAAGGGAAATAAGTTTACATACAATGACAACAAAGACGAAGGCCAAGAATATGCAAAAGCATCTGCATGGTACCATGTAACATATCACCCAGATTATTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTGCTGACAAGCTTATTCAAATCAAAAGAGAGAAGACGTCATTGATGAATTTTTCACCAATGTCATCACTGATACATAAATTTGGTGGGCTGAGTTTATACTAA 3294 40.5 MNLKDKPLQQNDMGKTIEIYGFRPEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAAEYIVAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEKMRVIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKDVDFTPSSCIGQSFALCLELSPEHHLPTFFQTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGPTLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDLSPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSDGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVLELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTIEEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQIVFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKFGGLSLY 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7864856 7871057 - Lsi09G006940.1 Lsi09g00694 670307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00694 1097 Pfam RNA dependent RNA polymerase 348 910 IPR007855 GO:0003968
Lsi09g00694 1097 PANTHER RNA-DEPENDENT RNA POLYMERASE 184 1092 - -
Lsi09g00694 1097 PANTHER RNA-DEPENDENT RNA POLYMERASE 14 182 - -
Lsi09g00694 1097 PANTHER RNA-DEPENDENT RNA POLYMERASE 184 1092 IPR007855 GO:0003968
Lsi09g00694 1097 PANTHER RNA-DEPENDENT RNA POLYMERASE 14 182 IPR007855 GO:0003968
Lsi09g00694 1097 SUPERFAMILY RNA-binding domain, RBD 8 78 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00694 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101205704 1887.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00999 Lsi-Chr4:11085478 Lsi09g00694 Lsi-Chr9:7864856 0 dispersed
Lsi04g01000 Lsi-Chr4:11105580 Lsi09g00694 Lsi-Chr9:7864856 0 dispersed
Lsi06g00212 Lsi-Chr6:2407673 Lsi09g00694 Lsi-Chr9:7864856 7.79E-17 dispersed
Lsi06g01537 Lsi-Chr6:25738978 Lsi09g00694 Lsi-Chr9:7864856 0 dispersed
Lsi08g01203 Lsi-Chr8:20570323 Lsi09g00694 Lsi-Chr9:7864856 0 dispersed
Lsi09g00680 Lsi-Chr9:7720069 Lsi09g00694 Lsi-Chr9:7864856 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g507 . . . . . . . . . . . Cma04g00091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01742 . . . . . . . Cmo15g00938 . . . Car15g00840 Cpe13g00418 . Bhi12g00954 . . . Hepe02g2614 . Lcy10g1379 Cla01g00645 Cam01g0673 Cec01g0664 Cco01g0691 Clacu01g0661 Cmu01g0634 Cre09g1871 Lsi09g00694 . Chy09g00814 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003921 0 1 0 0 0 2 2 1 2 1 2 2 2 2 3 2 2 0 2 2 2 2 1 2 2 2 1 4 1 0 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00694 Lsi_Chr09 FPKM 27.361158 29.175634 13.955398 13.275544 9.88107 10.116884 9.921833 16.689156 16.133604 14.61341