Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00702 ATGGCAGGATGCAAGATTTATCTGAAGAAAAGGAAAACAGATTGGCTTAATTCCCTTTTGCAAAGCAAATTTTTTGGTTCTTGTGTTCATCATCAAAACAATAGGAAAAATGAAAAGAATGTGTTTTGTATAGACTGTGGTATTGCCATCTGCAGGCATTGCCTGATATCTCATTGCGTTCATCGGCGTCTACAGATCTGTAAGTACGTTTATCAGTACGTCGTTCGTGTGCCCGACTTGCAAAACCACCTTGATTGTTGCAATATTCAGGTCTCTATGGTTCCAGTGGAACTTAACAATCAAAGCTGTAGATATATCGATTTGGAGTCGAATCTTAAAGACATTCCATGGAAGGAAAACCATAATCTAGAAACCAATACAAGCGAAATGGAATCGTCGTCGATCTCGGTGGCTGAATCAACTGAAGAAATTAAAGCGTGGCGAGTGAAGACCGTCTTGAATCCAAAGAAGCTTTTGCATAAAAGGAAGGGCATTCCCCATCGATCGCCTCTAAAGTAA 519 40.08 MAGCKIYLKKRKTDWLNSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCVHRRLQICKYVYQYVVRVPDLQNHLDCCNIQVSMVPVELNNQSCRYIDLESNLKDIPWKENHNLETNTSEMESSSISVAESTEEIKAWRVKTVLNPKKLLHKRKGIPHRSPLK 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7962579 7964679 + Lsi09G007020.1 Lsi09g00702 670315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00702 172 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 91 171 - -
Lsi09g00702 172 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 91 - -
Lsi09g00702 172 ProSiteProfiles Zinc finger B-box type profile. 28 66 IPR000315 GO:0008270
Lsi09g00702 172 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 91 171 - -
Lsi09g00702 172 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00702 - - - csv:101210438 304.293
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00470 Lsi-Chr8:12438417 Lsi09g00702 Lsi-Chr9:7962579 1.40E-18 dispersed
Lsi09g00702 Lsi-Chr9:7962579 Lsi11g00393 Lsi-Chr11:4086168 6.30E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g526 . . . . Bpe13g01001 . . . . . . Cma04g00083 . Car04g00084 . Cpe09g00608 Cpe01g01855 . . . . . . . . . . . . . . . . . Cone9ag0379 . Csa05g01972 . . . . . . . . . Bma06g01137 . Cmo04g02230 . Cma04g02137 . Car04g02074 . . . Bhi12g00959 . . . Hepe02g2605 . Lcy10g1600 Cla01g00649 Cam01g0678 Cec01g0671 Cco01g0697 Clacu01g0666 Cmu01g0639 Cre09g1866 Lsi09g00702 Csa05g01125 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002993 1 2 0 1 1 2 3 2 2 0 2 2 2 1 2 2 2 1 3 2 2 1 2 2 2 2 2 3 3 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00702 Lsi_Chr09 FPKM 9.337493 11.42923 9.097128 8.609542 8.085064 6.979003 8.666491 11.477662 9.73677 11.909016