Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00703 ATGTTTTTCGCCGCCGCCCCTCTCTCCATCCTCCTCTTCTTCTTCGCATCACCTCCCTCTCTGGCTGCCGCTCAACCGACGGCAAACCCCCGCAATTTCTCCTCCTTCTCAATATCCCAATCCCCATGGCGGCCCACCCAGAATCTTATTCTCCTCTCCCCCAACTCCCTTTTCGCCGCCGGCTTCCGCCCACTACCCAACGACTCCAATCTCTTCATCTTCTCCGTTTGGTACTTCAACATCTCAAAAGACAACGTCGTCTGGTCTGTCAACCGTCTTTCTCCGGTCAACCGTTCAGCGGCTCTGGCCATCATAGCCACCGGCCAGCTCCGTCTCGACGACGGCTCCGGTCGCAACCTCTGGCCTACTAACAGCGTTTCTGCGAATCCAAATTCGACCAAATTAATCCTTCGCAACGATGGTGATTTGATTTACGGCACGTGGGAGAGCTTCCAATTCCCCACCAATACTATCTTACCGAATCAAACATTCAATGGAACCACCATCGTCTCCAACAACGGCAAATACGCGTTTGTAAACTCTGCTAATTTGACGTTTGGTACAGAGATTTATTGGACCTCTGGAAATCCCTTCCAGAGTTTCCTAATTGGAGGTCAAATCATCATAAACAATCAAATCCCAGTTACCCCTTCTGATTTTAACTCGACACGCCTCCGGAAATTGGTTGTTGACGATGATGGGAACCTCAAGATTTTCAGCTTCAACCCCAATTCCCCGCGGTGGGATGTGGTTTGGCAAGCACACGTAGAGTTATGTCAAATCTTTGATACTTGTGGCACAAATTCCATCTGTATGAGTAGTGGCAGTTACAATTCCACTTACTGTGTCTGCGCTCCCGGATTCAGCCCCGATCCTCGCGGTGGCGCACGCCAAGGATGCCGCCGGAAACTCAATGTATCGAACAAACCCAAGTTTCTTCAACTGGATTTTGTGAGTTTCAGAGGTGGGGTTAAACAAATCTCCCTGCAAACCCCAAATATTTCAGTCTGTCAAGCGGATTGCTTAAAGAATTCCAGCTGCGTGGGCTATACATTCAGCTTCGACGGCAGCGCCCAGTGTGTGCTTCAGCTAAACATTTTGTCGAATGGGTTGTGGTCGCCAGGGATGAAGACAGCTGCCTTTGTGAAGGTCGACAATTCGGAAACAGATCAGTCAAATTTCACCGGAATGATGTACAAACTCCAAACCACATGTCCAGTTCGCATCACACTCCGCCCGCCGCCGGTAAATAAAGACAACACCACCAGAAACATATTGATAATCAGCACCATATTCGTTGCCGAACTAATTACCGGGGCGATTTTCTTCTGTGCATTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACGCTTGGTCTCGAATCACTTCCCGCCGGCGGTCCGAAGCGGTTTAACTACGCCGAGCTAAAGACGGCCACAAACGACTTCTCGAACTGCATTGGAAGAGGCGGATTCGGCGAAGTCTTCAAAGGGGAGCTGCCAGACAAACGCGTGGTGGCAGTCAAGTGCTTGAGAAACGTCGCCGGCGGCGACCGCGACTTTTGGGCGGAAGTGACCATCATCGCCAGGATGCACCATCTAAACTTGCTACGACTGTGGGGATTCTGCGCAGAAAAGGGTCAGAGAATTTTAGTATACGAGCATATCCCCAATGGATCGCTCGACAAATTCCTCTTCGTCAAACCTTCACCTTCCGATTCGGAGAAGGACGGAACAGAGACGGAAGAACAAAGCCCATCGCTGGATTGGAGTATTCGTTACCGAATCGCCATTGGAGTCGCGAGAGCAATCGCGTACTTGCACGAGGAATGCCTGGAATGGGTGTTACATCGAGACATAAAACCAGAGAACATCCTTCTGGACAACGATTTCTGCCCGAAGTTATCGGATTTCGGGCTGTCGAAACTGAGGAAAAACGAGGAGACGGCGGTGAGTATGTCTCGAATCAGAGGGACGCCCGGTTACGTGGCGCCGGAGCTGGTGAAATTGGGTTCGAATTCAATAACGACGAAGGCAGATGTGTACAGTTTCGGGATGGTGCTGCTGGAGATAATCAGCGGGACAAGGAATTTCGAGATAAAGAGATCGACGGTGGAGAGCGCGGATTGGTACTTCCCAGGATGGGCGTTCGAGAAGGCGTTCGTGGAGGAGAAGATGAAGGAGATTTTAGACGGTCGGATAAGGGATGAATACGAGAGCGGAGGCCATTTCGCGATTGTTAATCGGATGGTGCAGACGGCGATGTGGTGTCTTCAAAACCAACCGGAGAAGAGACCGTCGATGGGGAAGGTGGTGAAGATGTTGGAAGGGAAGCTTGAGATTCCTCCTCCAGAAAAGCCCTCTATTTACTTCTTGTCTGAACCCTAG 2394 50.5 MFFAAAPLSILLFFFASPPSLAAAQPTANPRNFSSFSISQSPWRPTQNLILLSPNSLFAAGFRPLPNDSNLFIFSVWYFNISKDNVVWSVNRLSPVNRSAALAIIATGQLRLDDGSGRNLWPTNSVSANPNSTKLILRNDGDLIYGTWESFQFPTNTILPNQTFNGTTIVSNNGKYAFVNSANLTFGTEIYWTSGNPFQSFLIGGQIIINNQIPVTPSDFNSTRLRKLVVDDDGNLKIFSFNPNSPRWDVVWQAHVELCQIFDTCGTNSICMSSGSYNSTYCVCAPGFSPDPRGGARQGCRRKLNVSNKPKFLQLDFVSFRGGVKQISLQTPNISVCQADCLKNSSCVGYTFSFDGSAQCVLQLNILSNGLWSPGMKTAAFVKVDNSETDQSNFTGMMYKLQTTCPVRITLRPPPVNKDNTTRNILIISTIFVAELITGAIFFCAFLKRFVKYRDMARTLGLESLPAGGPKRFNYAELKTATNDFSNCIGRGGFGEVFKGELPDKRVVAVKCLRNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKGQRILVYEHIPNGSLDKFLFVKPSPSDSEKDGTETEEQSPSLDWSIRYRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRKNEETAVSMSRIRGTPGYVAPELVKLGSNSITTKADVYSFGMVLLEIISGTRNFEIKRSTVESADWYFPGWAFEKAFVEEKMKEILDGRIRDEYESGGHFAIVNRMVQTAMWCLQNQPEKRPSMGKVVKMLEGKLEIPPPEKPSIYFLSEP 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7967748 7970141 - Lsi09G007030.1 Lsi09g00703 670316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00703 797 SUPERFAMILY Protein kinase-like (PK-like) 466 778 IPR011009 -
Lsi09g00703 797 PANTHER OS07G0415500 PROTEIN 13 796 - -
Lsi09g00703 797 CDD B_lectin 51 154 IPR001480 -
Lsi09g00703 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Lsi09g00703 797 PANTHER OS10G0101000 PROTEIN 13 796 - -
Lsi09g00703 797 Gene3D Transferase(Phosphotransferase) domain 1 558 783 - -
Lsi09g00703 797 Gene3D - 43 157 IPR036426 -
Lsi09g00703 797 ProSiteProfiles Bulb-type lectin domain profile. 36 158 IPR001480 -
Lsi09g00703 797 SMART serkin_6 483 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00703 797 ProSiteProfiles Protein kinase domain profile. 483 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00703 797 SMART blect_4 47 154 IPR001480 -
Lsi09g00703 797 Gene3D Phosphorylase Kinase; domain 1 453 557 - -
Lsi09g00703 797 CDD STKc_IRAK 489 779 - -
Lsi09g00703 797 Pfam D-mannose binding lectin 86 165 IPR001480 -
Lsi09g00703 797 PIRSF SRK 1 797 IPR024171 GO:0004674
Lsi09g00703 797 Pfam S-locus glycoprotein domain 213 290 IPR000858 GO:0048544
Lsi09g00703 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 196 IPR036426 -
Lsi09g00703 797 Pfam Protein kinase domain 488 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00703 797 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Lsi09g00703 797 ProSiteProfiles PAN/Apple domain profile. 300 386 IPR003609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00703 - - - csv:101221701 1457.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00703 Lsi-Chr9:7967748 Lsi05g01175 Lsi-Chr5:19671667 2.51E-104 dispersed
Lsi09g00701 Lsi-Chr9:7947731 Lsi09g00703 Lsi-Chr9:7967748 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83891 PF00069 Pkinase 4.30E-45 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00703 Lsi_Chr09 FPKM 1.738729 1.673031 13.668294 13.115443 23.440699 26.038132 23.512739 10.761322 10.975725 10.661478