Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00705 ATGCATGCTAAGTGGCTGGTTGAATCTGCATTGATCCCGTTGAGGCTTTTCCAGGAGCGATGTGAGGAAGAATTTCTATGGGAGGCTGAAATGATAAAGATTAAGGCGCAAGAATTGAAAAATAAAGAGGTAAGTGATAGTTGTAATAAGATTCAAGCTTCGAGAATGATTGATGGTGTCTTAGATTTCTGTTTAAATGTTTTTAAAAATAATGATATGCAAAAGCTTCTCTATGTTAGAGTAAATACTCGTCTTCTTTATCAGCAAACAAAGTTTAATCTTCTGCGGGAGGAAAGTGAGGGCTATGCCAAGTTGGTAACACTTCTTTGCCGGGTCACTGACGCTTCAAATAATAATTTTCCGGGTTCAACAATTGGTATTATAAAGTCATTGATTGGGCATTTTGATCTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAGTGTTTTGAACTGCAGCCAGAAAATAGTGTTTTTGTGGAGCTAATTCCAATATTTCCCAAGATAATCTTGCAAATACTTGCTGATGAACGAACTCTTAAAGTTTCTCATGATGTTTCCCATGCTTCACAAATCCTTGGGTTCAAATTTCAGTATTATCAGCGTATTGAAGTAAATTCGCCAGTTCCATTTGGACTTTATAAGCTTACAGCGTTACTAGTGAAGGAAAAGTTTATTGATCTTGATAGCATTTATGCACATCTACTTCCCAAGGAGGACGAGGCATTTGAGCATTATGGTTCCTTTTCTTCCAAACGACTGGATGAGGCTACCAGAATAGGTAAAATAAATCTTGCGGCAACTGGAAAGGACCTAATGGATGATGAAAAGCAAGGAGATGTAAGCATTGATCTTTTTGCTCCTCTTGACATGGAAAGTGAGGCAGTCAATGAAAGGTCTCCAGAGCTGGAAAATAATCAAACATTGGGCTTGCTTACTGGATTTCTTTCTGTGGGTGACTGGTGTCATGCACATGTACTATTTGATCGGCTTTCGCCTCTCAATCCAGTGGAACATCTTCTCATTTGTAACAGCTTGTTTAGGCTCATTGAAGAATCAATCTCCTCTGCATACTCTATTGTTCGTCAGAATCCTTATCAGAGCTTGGGAGCTTCTTCAGGAACTAGCTTTGATACTATTGGTACCACAATATTGCCAGTTGGTGGTTCTTTTATAGATCTTCCGAGAGAACTTTTCCAGATGCTTTCCGCTGCTGGACCTTATCTCTATCGCGATACAATTCTGCTACAGAAGGTTTGTAGGGTGCTGAGAGGTTATTATTCATCGGCAATTGAGTTTGTCAACAGTGTGGAAAGTGGTCCAAATCCTGGACTTGTTATGCCAGCTGGAAATCGGGTCCCTCATCTTCACTTAAAGGAAGCTAGGTTGAGGATTGAGGAAGCCTTAGGAACGTGCCTACTTCCTTCGTTACAGTTGATACCTGCCAATCCCGCTGTTGGTCAAGGAATATGGGAAGTAATGAATCTTCTTCCATATGAGGTGCGATACCGTTTATATGGTGAATGGGAGAGAGATGATGAGAAGATTCCAATGATTTTGGCTGCAAGGCAAACGGCAAAGATTGAGGCATATAGGGATATGATTACTCCGGTAGTAGATGCATTCAAGTATCTGACTCAGCTTGAATATGACATATTGGAATATGTTGTGATTGAACGTTTGGCGCAAGGAGGGCGTGATAAGTTGAAGGATGATGGCCTTAATCTCTCAGATTGGCTCCAATCATTAGCTTCATTTTGGGGTCACCTGTGTAAGAAGTACCCATCTATGGAACTAAGGGGTTTGTTTCAGTATCTCGTTAATCAGTTGAAAAAAGGTCAAGGAATTGAGCTTGTTCTCCTGCAGGAACTGGTCCAACAAATGGCTAATGTCCAATACACAGAAAACCTAACTGAGGAACAGTTGGATGCTATGGCAGGAAGTGAGACACTTCGCTTTCAAGCAACTTCTTTTGGAGTTACTCGAAATAACAAGGCGTTGATCAAGTCAAGCAACAGACTGCGTGACTCGTTGCTTCCTAAGGATGAACCAAAATTGGCAGTCCCTCTTTTGCTACTTATTGCTCAACACCGTTCATTGGTTGTTATAAATGCAGATGCTCCTTATATAAAGATGGTCAGCGAGCAGTTTGATAGATGTCATGGAACTCTGCTACAATATGTGGAATTTCTTAGTAGTGCAGTTACGCCTGCTTCAGCTTATGCTCAGTTGATTCCCTCACTCAACGAGCTTGCCCATCTTTATCACCTAGATCCCGAGGTTGCTTTCCTGATTTATCGGCCAATAATGAGGCTATTTAAGTGTCAGGGTGGTTCTGATATCTTCTGGCCACTGGATGGAAATGATGCAAATGTTGTAGGCAATAATTCTGATCTGGAACCTACAGAATGTTCTGCTGATGTCGTTTTGGATCTTGGTTCTTTACAGAAACCTGTGAGGTGGTCAGATCTGCTTGATACTGTGAAGTCTATGTTACCTCCAAAAGCTTGGAATAGCTTGTCTCCAGATCTCTATACTACATTTTGGGGTCTCACTCTCTACGATCTTTATGTTCCTCGGAGTAGATATGAATCTGAAATTGCTAAGCAGCATTCTGCCCTTAAAGCTTTAGAAGAACTCTCTGATAACTCGAGTTCTGCAATCAACAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCCTGTCCAATGAACTTGTTAAGCATGAAGAAAATGTTGCATCCGTTCTTAGACGACTTTCTCGTGAAAAGGATAAGTGGTTGAGCTCCTGTCCTGATACTCTGAAAATTAACATGGAGTTCCTTCAGCGTTGTATTTTTCCCCGCTGTACATTCAGTATGCCCGACGCTGTCTACTGTGCTATGTTTGTGCACACTCTTCATTCCCTTGGAACACCATTTTTCAATACAGTCAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGTACGGAATATGAAGCAGGCAGGCTTGGAAGGTTTTTATATGAGACACTAAAGATAGCTTATCATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTCGCCGTCTATTATAGGTATCCAAATAGCCAAAGAGTAACGTACGGCCAGTTCATCAAGACTGTATCTCTTGAGATATATAGGAAATGGACTAGTGGGAAAAAAATATATCCTATACATCAATCTGTTATGATGCAAAAGCAATCGTTCTTCCCCGGGTGTAACTCCAGTAAGTTCTGTAGTGGTGTAACTCCAGCAAGTCCTGAATTACCTTGCAAGATTATCTTCTTTGGCTTGGTTTCTCCAGGGTTGGCTTCTTTCGTTCATTGGAAGTGGAGTCAAAGAATCACACGGTTACTGATACAATGCTTGGAATCTACAGAATACATGGAAATTAGAAATGCTCTTATAATGTTAACAAAAATTTCCAATCCTTCATGGGTTACGGATGAAGAATTTGGCATGGGTTACCTTGAATTAAAGACTGCACCATCTCTTGCATCAAAGCCTTCGGCTAGTAATTTAGCTGCTAGCCAAAATAATTCCATTTATCTTTCCCAAAATGAACCTGGTGGAGGGAAGACCACTACATTACCCATCCCAAATTCAGATTCTGGAAATATGGTGAAAGATCATTCATTGAGGTCAAGGACTTCTGATGTGAGAACGGATAAAATAGATAGTCTCTCTGTTCCAAAATCTGAGCTCGGGCATGGGAAACTGAAAGGCACGTCATTGAACGGGCCAGATTCCCAGCCACTGGTACCCTCAACTTCTGTGAATTCAGGATCGTTAAGAATGGTGGAAAGTCAGAAACCAGGTGATGACTTAAGTAGGACTTTGGATGAGGGCTCATCAAAAGTTGTTTCAAAGACCTCTTCTGAATCCGAGTTAAGAGTTTCATCAAAACGATCAGTGCCTATTGCGTCTCTTAATAAAGCACCAAAACAAGATATCGCAAAAGATGAAATTAGGTCAGGAAAAGCTGCTAGCAAGAATCCTGGGTCTTCAACAAGTGAAAGGGAGCTTCCAGTTCATGCAACAACAGACGGTGGTAGGCATGGAAGTTCTTCCAATGCACCTTCTTCCGTTATGCCAAACGGTAATACGCAAAGTTCATCAATTAAAGGCTCATCCTTATCAGTAAAAGTTTCAGATGGTCACACTATTGAATCGAAGGCAGAGACGGGGGTTGGGAGGACATCTGATGGTAGGGCTTCATCAATGAAGGATGATGGCACAGAAGCTCTTGATGTTGCGAGATCCTCTTCTTCCAGACTTGCTCATTCTCCCAGGCATGATAATTATTCCAGTGGTTCTAGATCTAGTGATAAGCTGCAGAAAAGAGCTAGTCCTGCAGAAGAACCAGACAGACAAGGTAAACGCCGCAAAGGAGATGGTGAAGTTAGGGATGTAGATGGGGATTTTCGTATCTCTGACAAAGATAGATCCATGGACCCACGATCTGTAGATGCTGATAAAGTAGGAACGGATGAACAAAGTGGTTACAGAGGTTCAGAAAAAACTTTGGATAGAACAAAAGATAAAGTAAATGAAAGGTATGATAGGGACTACAGAGACCGGATTGAGCGCCCTGAAAAGTCCCGTGGAGATGATCCTTCAGTAGAAAAAACAAGAGACAGATCAATAGAAAGATATGGAAGAGAGCGCTCAGTTGAGAAAGTGGAAAGAGTTTCTGATAGGTATCCCGAAAAGTCTAAGGATGAGAGAAATAAAGATGATAGGAGCAAATTACGATATAGTGATTCAACTATAGACAAGTCTCACGTTGATGATCGGTTCCACGGACAGAGCTTGCCACCCCCGCCACCCTTGCCTCCGCACATGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGCAGATAGGAGGTTTGGAACTACTAGACATGCTCAGAGGCTTTCTCCTAGACATGAAGAAAAGGAACGAAGACGTTCAGAGGAAAATTTAATTTCACAGGATGATGCAAAACGCAGAAGAGAAGAGGAATTTCGAGAAAGAAAGAGAGAAGAGAGAGACGTGGGGATGTCATTGAAGGCAGATGACAGGGAGAGGGAAAAGGCAAACCTTTTGAAGGAGGACATGGACGCTTCTGCCGCCTCTAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTAGCTGAGGCTGGTGAGTATTCTCCTGTTGGCCCACCACCGCCTCCGATGGGTGGTGGTGTGTCTCAATCTTATGATGGACGAGAAAGAGGAGACCGGAAGGGAGTAATGATGCAGCGTGCTGGTTACCTGGATGACCCAGGCTTGAGAATTCACGGTAAAGAAGTGGTCAACAAGATGACCAGACGATTTAGAATGTATGATCGAGAATGGGATGACGAGAAGAGAATGAGAGCAGATCAGAAGCGGAGGCATCGGAAATAA 5478 41.93 MHAKWLVESALIPLRLFQERCEEEFLWEAEMIKIKAQELKNKEVSDSCNKIQASRMIDGVLDFCLNVFKNNDMQKLLYVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDASNNNFPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKIILQILADERTLKVSHDVSHASQILGFKFQYYQRIEVNSPVPFGLYKLTALLVKEKFIDLDSIYAHLLPKEDEAFEHYGSFSSKRLDEATRIGKINLAATGKDLMDDEKQGDVSIDLFAPLDMESEAVNERSPELENNQTLGLLTGFLSVGDWCHAHVLFDRLSPLNPVEHLLICNSLFRLIEESISSAYSIVRQNPYQSLGASSGTSFDTIGTTILPVGGSFIDLPRELFQMLSAAGPYLYRDTILLQKVCRVLRGYYSSAIEFVNSVESGPNPGLVMPAGNRVPHLHLKEARLRIEEALGTCLLPSLQLIPANPAVGQGIWEVMNLLPYEVRYRLYGEWERDDEKIPMILAARQTAKIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRFQATSFGVTRNNKALIKSSNRLRDSLLPKDEPKLAVPLLLLIAQHRSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAHLYHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVVGNNSDLEPTECSADVVLDLGSLQKPVRWSDLLDTVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPRSRYESEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSNELVKHEENVASVLRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKTVSLEIYRKWTSGKKIYPIHQSVMMQKQSFFPGCNSSKFCSGVTPASPELPCKIIFFGLVSPGLASFVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNPSWVTDEEFGMGYLELKTAPSLASKPSASNLAASQNNSIYLSQNEPGGGKTTTLPIPNSDSGNMVKDHSLRSRTSDVRTDKIDSLSVPKSELGHGKLKGTSLNGPDSQPLVPSTSVNSGSLRMVESQKPGDDLSRTLDEGSSKVVSKTSSESELRVSSKRSVPIASLNKAPKQDIAKDEIRSGKAASKNPGSSTSERELPVHATTDGGRHGSSSNAPSSVMPNGNTQSSSIKGSSLSVKVSDGHTIESKAETGVGRTSDGRASSMKDDGTEALDVARSSSSRLAHSPRHDNYSSGSRSSDKLQKRASPAEEPDRQGKRRKGDGEVRDVDGDFRISDKDRSMDPRSVDADKVGTDEQSGYRGSEKTLDRTKDKVNERYDRDYRDRIERPEKSRGDDPSVEKTRDRSIERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYSDSTIDKSHVDDRFHGQSLPPPPPLPPHMVPQSVNSGRREEDADRRFGTTRHAQRLSPRHEEKERRRSEENLISQDDAKRRREEEFRERKREERDVGMSLKADDREREKANLLKEDMDASAASKRRKLKREHLSLAEAGEYSPVGPPPPPMGGGVSQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVNKMTRRFRMYDREWDDEKRMRADQKRRHRK 1825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7983305 8008188 - Lsi09G007050.1 Lsi09g00705 670318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1435 1463 - -
Lsi09g00705 1825 Coils Coil 888 929 - -
Lsi09g00705 1825 Coils Coil 1679 1699 - -
Lsi09g00705 1825 Pfam THO complex subunit 2 N-terminus 389 529 IPR032302 -
Lsi09g00705 1825 Pfam THO complex subunit 2 N-terminus 69 368 IPR032302 -
Lsi09g00705 1825 PANTHER THO COMPLEX SUBUNIT 2 527 1059 - -
Lsi09g00705 1825 PANTHER THO2 PROTEIN 1125 1161 IPR040007 GO:0000347|GO:0006397|GO:0006406
Lsi09g00705 1825 PANTHER THO COMPLEX SUBUNIT 2 1125 1161 - -
Lsi09g00705 1825 PANTHER THO COMPLEX SUBUNIT 2 3 529 - -
Lsi09g00705 1825 Pfam Transcription factor/nuclear export subunit protein 2 1126 1161 IPR021418 -
Lsi09g00705 1825 Pfam Transcription factor/nuclear export subunit protein 2 837 1059 IPR021418 -
Lsi09g00705 1825 PANTHER THO COMPLEX SUBUNIT 2 1162 1734 - -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1300 1325 - -
Lsi09g00705 1825 PANTHER THO2 PROTEIN 527 1059 IPR040007 GO:0000347|GO:0006397|GO:0006406
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1227 1248 - -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1464 1618 - -
Lsi09g00705 1825 Pfam Transcription- and export-related complex subunit 517 584 IPR021726 -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1806 1825 - -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1201 1226 - -
Lsi09g00705 1825 PANTHER THO2 PROTEIN 1162 1734 IPR040007 GO:0000347|GO:0006397|GO:0006406
Lsi09g00705 1825 PANTHER THO2 PROTEIN 3 529 IPR040007 GO:0000347|GO:0006397|GO:0006406
Lsi09g00705 1825 Coils Coil 860 880 - -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1368 1403 - -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1201 1769 - -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1639 1740 - -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1347 1361 - -
Lsi09g00705 1825 MobiDBLite consensus disorder prediction 1262 1285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00705 K12879 THOC2; THO complex subunit 2 - csv:101221461 2909.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00705 Lsi_Chr09 FPKM 63.79797 64.98851 78.35276 75.654869 33.256001 33.358166 35.738724 100.216415 107.714966 108.491364