Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00707 ATGAGGGAACCCCATTTGGGTTTTGGGGTTTTCCTCTTGGTTTTCCCCTTGTTTCTGCAGTTTGTGGGGTTCTCTGTTTATGCTCAGACGGCCGGCGGTGGAGGCGATGGGTCAGTGATGAATCTCTTGAGGAATAGTATTGGAGCTCCGAGTTCTCTTGGATGGACTGGTTCAGATTACTGTCAATGGAAGCATGTTAAATGTGATTCTCAGAACCGAGTTGTCAAAATTCAAATTGGTAATCAAAACCTCAAGGGATCACTTCCGACGGAACTCTCCAGTCTCTCGGCGTTAGTGCAATTAGAGGTACAGGGCAACCAGCTGGGTGGGCCGTTCCCGAATCTTGCCGATTCTCTGCAGATACTTTTAGCGCATGATAATCTTTTTACTTCCATGCCGGCTGATTTCTTCGCGAAGAAGTCAGCTCTGCAAACCATAGATATCGACAACAATCCCTTCTCGGCGTGGAGAATTCCCGATAACATTCGAGACGCATCTGGGCTACAGGAAATATCGGCCAATCGCGTTAATATAACCGGTACAATCCCTGAAGTTTTCGATGGCGCAACGTTTCCGACTCTTAGGAACTTGCATTTGGCGGGTAATTTTCTTGAGGGTGGATTACCAACAAGCCTTGCAGGTTCTTCGATTCAGTCGCTTTGGTTGAATGGACAACAGAGTAGCTCTAAGTTAAACGGTTCAATCGCCATATTGCAAAATATGACTAATTTGCAGGAGATTTGGTTGCATTTGAACCAGTTTTCAGGTCCTTTGCCGGATTTCTCTAACCTTCAGGGATTAGTGAACTTGAGTTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCGTCCTTGGTAAATTTGAAATCCCTCATGGTTGTGAATTTGACGAATAATATGCTTCAAGGACCAACTCCTGCTTTTAATCCTAATGTTCAGCTGGATATGAGACCAGGATCGAACAATTTTTGCTTGAATTCTCCGGGTGAACCATGTGATCCCCGCGTTAATGCTTTGTTATCGGTTGCACAGTCAATGGGTTTTCCCACAACCTTTGCCCAAGGCTGGGTAGGGAACAATCCTTGTGGGAATTTCAAAGGTATTACATGTACTGGCAACCCTGGAAATATAACTATACTTAACTTCAAGAATATGGGTCTTGTGGGCTCTATTTCTCCTAGCTTTTCATTGCTTACATCTGTGCAAAAGTTGTTTCTATCTGACAATTTTCTATCTGGGACAATACCAAACGAACTTGTGAATATGCCTAGTCTTACAGAATTAGATGTCTCCAATAACAGGCTTCATGGAAAAATCCCAGCCTTCAGGAAAAATGTGATTGTGAACACCGAGGGGAACCCGGATATAGGGAAAGATAGTGCCAGTGCTCCTACACCAGGTCCTCCCACTGGGAAATCGCCCTCCGATGGATCAGGTGTCGTATCTGATAATGGTGATAAGAAAAGTAATAACGGAGTGGTTGTTGGTTCAATAATTGGTGTTATTGTTGGTCTCCTTCTTGTTGGGACTGTGATTTTCTTTTTGTACAAGAGAAAGAAGAGACATGGTAGTAGAGTGCAGAGTCCAAATACAGTGGTGGTACATCCTAGTCATTCTGGGGACCAGAATTCGGTGAAGATTACGATTATGGAGGCTAGAGCTGATGGGAGTGCACCCGAAACCAGCAGAGTTCCTATTGCTGGACCTAGCGATGTACATGTGGTTGAGGCTGGAAACCTGGTTATCTCAATTCAAGTTTTAAGGAATGTAACTAATAATTTTAGCCCTGAAAATATATTGGGGAGAGGGGGTTTTGGAACTGTTTACAAGGGAGAATTGCATGATGGTACAAAGATTGCTGTGAAGAGAATGGAGTCTGGAGTCATAGGTGAGAAGGGTTTGAATGAATTCAAGGCTGAAATTGCAGTTCTTACTAAGGTTCGTCATAGAAATTTGGTTGCGCTTCTTGGGTATTGCTTGGATGGAAATGAGCGGCTTCTCGTTTACGAATACATGCCCCAGGGGACGTTTAGTAGGGGTGTTGAGTATTTGCATAGTTTAGCACATCAAAGTTTTATCCATCGCGATCTTAAGCCATCAAACATTCTTCTAGGAGATGATTTGCGGGCTAAAGTAGCTGACTTTGGGTTGGTTCGTCTTGCTCCTGAAGGGAAGGCGTCAATTGAAACAAGACTTGCAGGAACATTTGGCTATCTTGCCCCTGAATATGCAGTAACTGGACGTGTTACGACCAAGGTCGACGTTTATAGCTTTGGGGTGATTCTCATGGAGATGATCTCTGGTAGAAAAGCAATCGACGAGAGCCAGCCAGAAGAAAGTTTGCACCTTGTATCATGGTTCCGCAGAATGCACATTAACAAGGACACTTTCCCGAAGGCCATAGACCCTTCAATTGACATAGACGAGGAGACCCTTGGCAGCATCAACACAGTGGCAGATTTGGCTGGCCATTGCTGTGCAAGGGAACCATACCAGCGGCCCGACATGAGTCATGCAGTAAACGTGCTTTCGTCTCTAGTCGATGTCTGGAAGCCTACAGAACCGGACTCTGAAGAGAATTTGGGAATTGATCTTGAGCTTTCATTACCACAGGCCCTTAGGAAATGGCAGGCATTTGAAGGAAATAGCAATATGGATGAGTCATCCTCTTCATCATCATTCCTCGCCAGTGGAGACAATACACAAACCAGTATTCCGAATCGGCCATCTGGTTTTGCAAATTCATTTACCTCTGTCGACGCACGGTGA 2769 44.64 MREPHLGFGVFLLVFPLFLQFVGFSVYAQTAGGGGDGSVMNLLRNSIGAPSSLGWTGSDYCQWKHVKCDSQNRVVKIQIGNQNLKGSLPTELSSLSALVQLEVQGNQLGGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDIDNNPFSAWRIPDNIRDASGLQEISANRVNITGTIPEVFDGATFPTLRNLHLAGNFLEGGLPTSLAGSSIQSLWLNGQQSSSKLNGSIAILQNMTNLQEIWLHLNQFSGPLPDFSNLQGLVNLSLRDNQLTGIVPSSLVNLKSLMVVNLTNNMLQGPTPAFNPNVQLDMRPGSNNFCLNSPGEPCDPRVNALLSVAQSMGFPTTFAQGWVGNNPCGNFKGITCTGNPGNITILNFKNMGLVGSISPSFSLLTSVQKLFLSDNFLSGTIPNELVNMPSLTELDVSNNRLHGKIPAFRKNVIVNTEGNPDIGKDSASAPTPGPPTGKSPSDGSGVVSDNGDKKSNNGVVVGSIIGVIVGLLLVGTVIFFLYKRKKRHGSRVQSPNTVVVHPSHSGDQNSVKITIMEARADGSAPETSRVPIAGPSDVHVVEAGNLVISIQVLRNVTNNFSPENILGRGGFGTVYKGELHDGTKIAVKRMESGVIGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMHINKDTFPKAIDPSIDIDEETLGSINTVADLAGHCCAREPYQRPDMSHAVNVLSSLVDVWKPTEPDSEENLGIDLELSLPQALRKWQAFEGNSNMDESSSSSSFLASGDNTQTSIPNRPSGFANSFTSVDAR 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8025244 8028677 - Lsi09G007070.1 Lsi09g00707 670320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00707 922 PANTHER RECEPTOR PROTEIN KINASE TMK1 678 922 - -
Lsi09g00707 922 SUPERFAMILY Protein kinase-like (PK-like) 582 862 IPR011009 -
Lsi09g00707 922 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Lsi09g00707 922 SMART serkin_6 594 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00707 922 Pfam Leucine rich repeat N-terminal domain 36 69 IPR013210 -
Lsi09g00707 922 Pfam Leucine rich repeat N-terminal domain 336 370 IPR013210 -
Lsi09g00707 922 Pfam Protein tyrosine and serine/threonine kinase 598 678 IPR001245 GO:0004672|GO:0006468
Lsi09g00707 922 MobiDBLite consensus disorder prediction 453 486 - -
Lsi09g00707 922 SUPERFAMILY L domain-like 39 326 - -
Lsi09g00707 922 Pfam Protein kinase domain 679 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00707 922 Gene3D Phosphorylase Kinase; domain 1 560 671 - -
Lsi09g00707 922 Gene3D Ribonuclease Inhibitor 334 460 IPR032675 -
Lsi09g00707 922 PANTHER RECEPTOR PROTEIN KINASE TMK1 30 679 - -
Lsi09g00707 922 PANTHER OSJNBA0070M12.3 PROTEIN 678 922 - -
Lsi09g00707 922 MobiDBLite consensus disorder prediction 884 922 - -
Lsi09g00707 922 PANTHER OSJNBA0070M12.3 PROTEIN 30 679 - -
Lsi09g00707 922 ProSiteProfiles Protein kinase domain profile. 594 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00707 922 Gene3D Transferase(Phosphotransferase) domain 1 676 861 - -
Lsi09g00707 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Lsi09g00707 922 SUPERFAMILY L domain-like 338 442 - -
Lsi09g00707 922 Gene3D Ribonuclease Inhibitor 35 331 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00707 - - K00924 csv:101210025 1592.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00707 Lsi-Chr9:8025244 Lsi09g00911 Lsi-Chr9:11108040 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83892 PF00069 Pkinase 1.10E-26 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00707 Lsi_Chr09 FPKM 4.789419 3.739841 2.237538 2.393992 3.310892 3.542378 2.818638 1.027574 0.727768 0.71139