Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00708 ATGTCGCCATGTCATTATCACAGAGATTTGCGATGGAGATTTTCGTCTTCCCTTTCCCACCAATTCGATTCTCACTCCCACAGTGAAGAGAAAGCAAATAAAAATAAAAACCCAGAAGGAAATTTTGTTAATTTTGAGTTTTCTGGTTCTGGGTCCATTCAGGTTGGAGTAAAAGCCACTCCGGATCGACTTGTGGAGGAGTTTCTTCTTCCTCCATCATCTCTGCAAATCATTGGTTACATTTTTGCATTCTTTTTTGATACCCAGGCTACGCGTGTGTGGTTTTTCTTGGGTTTAGCGACCTCATTGACCAGAAAGTATATGAAGCGAGGAATTCTTTGGAATGTCAGATGGTGTTGTGACGATCTTCCTCTTGTCAACATTTTGCTTTTCTGTTTAATTGCAGAAGAAAGTCTCAGAGGAATTTTCAGAAAGAAAGTGAGCTCAAGAATGTTGCTAGGTCTTCTTCAGCAGGGCAACAACTCTGTGGCTATGAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTGTTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGATGATAATAAAGTGAGAAGGAACGAAGTGTTGGGGAGCATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCGTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCAGAGAGGGATATCTTTGAAAAGCAACACGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCGCCAATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCGTATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGTGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTTTTAACGAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTTTTGACATTTCCTGTTTACAAATCCAAATTGCCATCTAAACCAACTGAAGAAGATCGGATTGAAGCAACAGCAGGCTACGTTGGTGGAGCCTTTGATGTCGAGTCACTCGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAACGTATATGATGTCACAAACGCTTCAGATCCCCTCGTCATGTATGGTCATCAATATCAAGATGGTGACTTGTCTCTTTTGCATGAGAGTAGCCTTGATTTTGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTCTTATTCTTCGTGATCGGGTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTTCATGAGATGCAAGTACTGAAAGGTCAGGCGGAGGCTGCTGATGTAGCAAAATCCCAGTTTCTTGCAACTGTTTCTCACGAAATTAGGACACCAATGAATGGAATCCTCGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCTACACAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGACCGGGCAAAAATTGAAGCAGGAAAGTTAGAACTGGAAGCAGTTCCATTTGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAAAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTTATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGCACTCAAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACGGTGACTTATTCATATCGGGTGGTCGTGAATTTCAAACTTTGAGTGGATGTGAGGCAGCCGATGATCAGAACGGCTGGGATAACTTTAAATATCTAATTGCTGATGAGGACTTCCAGTTGAATGCCACTCCAAACAACATATTAGTTACCAATGAGGGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTCATACATGCCCAAAATCGAGTTTTCATGCCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAATTATGGGGGGACTGGTATCGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCATATCAACTTCATTAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTTTTAGGAAAATGTAAGAAAAATTCAATCAATGATATGAAAAAACCCAGCTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATAATAGTTGACAGGAAGCATGTTAGAGCTTCTGTAACCAGATATCATTTGAAGAGACTTGGTATTATAGTTGAAGTCACCAGTAGCATCAACATGGCAGCTTCTTTATGCAGAGAAAATGGATCCACAAATAAGCATGAAAGTAAGAGAATAGGATTTAAGCTGTTATTTATTGTGCTTTGGAACTTCCCAAATTTTAAGGAGTATTTCTGTAAGATATTTGAGATTGTTAATGTAATTGGGAAAGGGGTTCAGTTCAGTTTGCTCAATTGTAAGTTTGAACACTTGAAAACAGCGAGATTCACCAAAAGCACAATTCTTCCAGATATGATCTTAGTTGAAAAAGACACGTTAAAGTCCGACGAGGAATGTGGGATCATTCATCAACTGAACTGGAAACTGAACGGGAGTTCATTTAAGTTACCAAAGCTGATTCTTCTTGCTACAAATATTACCACTGCAGAACTAGACAAGGCAAGAGCAGCAGGTTTTGCAGACACCGTGATCATGAAACCGTTGAGGGCAAGTATGGTGGCTGCCTGTCTTCAACAAGTACTTGGGGTTAAGAATCAGAGACGGGGAAGAGGCCTACCAAACGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACAGAGTAAACCGTAGGGTCGCTGCAGGCGCTCTGAAGAAATTCGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCCCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCCGAAATGGATGGGTTTGAGGCGACTCGTCTTATCAGGATGATGGAGAACAAGGAAAACGAAGGAGGATCATCTGCAGCTGAAGGCAAGTGGCATATGCCGATATTAGCAATGACTGCAGACGTGATTCATGCTACGTATGACGAATGCCTGAAATGCGGAATGGATGGCTACGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAGGAAGTTGCTAAGTTTTTCAAAAAATCATAG 3594 41.85 MSPCHYHRDLRWRFSSSLSHQFDSHSHSEEKANKNKNPEGNFVNFEFSGSGSIQVGVKATPDRLVEEFLLPPSSLQIIGYIFAFFFDTQATRVWFFLGLATSLTRKYMKRGILWNVRWCCDDLPLVNILLFCLIAEESLRGIFRKKVSSRMLLGLLQQGNNSVAMKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDDDNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNASDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKGQAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDGDLFISGGREFQTLSGCEAADDQNGWDNFKYLIADEDFQLNATPNNILVTNEGCGHVTLMVSVEDTGIGILIHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGHINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPSSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGIIVEVTSSINMAASLCRENGSTNKHESKRIGFKLLFIVLWNFPNFKEYFCKIFEIVNVIGKGVQFSLLNCKFEHLKTARFTKSTILPDMILVEKDTLKSDEECGIIHQLNWKLNGSSFKLPKLILLATNITTAELDKARAAGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMENKENEGGSSAAEGKWHMPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYKEVAKFFKKS 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8040783 8049050 - Lsi09G007080.1 Lsi09g00708 670321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00708 1197 PANTHER TWO-COMPONENT HISTIDINE KINASE 173 904 - -
Lsi09g00708 1197 Gene3D - 210 262 - -
Lsi09g00708 1197 CDD HisKA 532 593 IPR003661 GO:0000155|GO:0007165
Lsi09g00708 1197 CDD HATPase_EvgS-ArcB-TorS-like 649 825 - -
Lsi09g00708 1197 PANTHER TWO-COMPONENT HISTIDINE KINASE 953 1196 - -
Lsi09g00708 1197 PRINTS Bacterial sensor protein C-terminal signature 770 780 IPR004358 GO:0016310|GO:0016772
Lsi09g00708 1197 PRINTS Bacterial sensor protein C-terminal signature 752 766 IPR004358 GO:0016310|GO:0016772
Lsi09g00708 1197 PRINTS Bacterial sensor protein C-terminal signature 787 805 IPR004358 GO:0016310|GO:0016772
Lsi09g00708 1197 PRINTS Bacterial sensor protein C-terminal signature 811 824 IPR004358 GO:0016310|GO:0016772
Lsi09g00708 1197 SMART HKATPase_4 644 827 IPR003594 -
Lsi09g00708 1197 ProSiteProfiles CHASE domain profile. 259 471 IPR006189 -
Lsi09g00708 1197 SMART REC_2 1064 1190 IPR001789 GO:0000160
Lsi09g00708 1197 Gene3D - 1059 1197 - -
Lsi09g00708 1197 Pfam Response regulator receiver domain 1066 1190 IPR001789 GO:0000160
Lsi09g00708 1197 Pfam CHASE domain 262 442 IPR006189 -
Lsi09g00708 1197 ProSiteProfiles Response regulatory domain profile. 1065 1194 IPR001789 GO:0000160
Lsi09g00708 1197 PANTHER HISTIDINE KINASE 4 173 904 - -
Lsi09g00708 1197 SMART CHASE_2 259 444 IPR006189 -
Lsi09g00708 1197 PANTHER HISTIDINE KINASE 4 953 1196 - -
Lsi09g00708 1197 ProSiteProfiles Histidine kinase domain profile. 539 827 IPR005467 -
Lsi09g00708 1197 Pfam His Kinase A (phospho-acceptor) domain 532 597 IPR003661 GO:0000155|GO:0007165
Lsi09g00708 1197 SUPERFAMILY CheY-like 1063 1193 IPR011006 -
Lsi09g00708 1197 CDD REC_hyHK_CKI1_RcsC-like 1066 1190 - -
Lsi09g00708 1197 Gene3D CHASE domain 263 478 IPR042240 -
Lsi09g00708 1197 Coils Coil 582 602 - -
Lsi09g00708 1197 SMART HisKA_10 532 597 IPR003661 GO:0000155|GO:0007165
Lsi09g00708 1197 Gene3D - 596 830 IPR036890 -
Lsi09g00708 1197 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 586 822 IPR036890 -
Lsi09g00708 1197 Gene3D - 505 595 - -
Lsi09g00708 1197 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 644 825 IPR003594 -
Lsi09g00708 1197 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 518 598 IPR036097 GO:0000155|GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g00640 Lsi09g00708 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00708 Lsi-Chr9:8040783 Lsi09g01720 Lsi-Chr9:25778254 5.06E-63 dispersed
Lsi09g00708 Lsi-Chr9:8040783 Lsi11g01360 Lsi-Chr11:22210127 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25892 PF02518 HATPase_c 3.10E-31 CL0025 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00708 K14489 - vvi:100254304 1474.53