Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00710 ATGTTCGAGGCCAAGGATCTCGCCTCCGATGGCGAGAACTCTCGGACCAAGCTTTTGCGCCATGTTTCTGAGCGTATCAGGGAGAATTCTGATACCAAATCTGGGTTTTCCGACAAGGGTATTGTTGCTTTTCGGGAAGAATCCATATCTGCTAGAATCGGGAATTCGGGTTCTTCTCAAGAACTCACTCTTAGCTACCTCTGTGACAAGGATAAGGGTTTTGCGCCTTCCTTCGAGAAAGGTAGTTATAAAGGTAAGGAAGTTTTGTTTTCTGAGAATTCTAACGAAGATGATAAATGGGTTGAGAGGGATTTCCTTAATTTGAACTCCAATAGGGGAAATCAATCGAAGCGGGAGGTTGAGGAAGAGATTGAAAGGGAGAATCGGGGGAAGAAACCCAAGCTTGAAACTCTTAATCTTTCTTTAGCTTTGCCTGAAGTTTCACTTTCTCTTACTGCTTCAAATGCTTTGCAAAATGAAGATCCTCCCCCTGTTCGATCCAAGCCTTGTAGGAGCCTCCAATCTTTGGCCCCTTCAATGAACAATACCCAAACTACTTGCTCTAACGATTTCACTGCTGCTTCGCTTTCCTATTCCTACTCCCACCAATTTTCTCACAACCCCAGTTGCTCGTTGACGAGAAATTCGACCGAGAATTACGAGTATTCGGTTGGAAGAGACGACCATATTTGGAACTGTGGAGAGGGAACGAATGGGTCTGTTCATAGCAGGTTCAAACCATTAGGGGATGGAGTTGCTTTGTCAAATCATGGAGGTGGGCTGAATTCTTTGTTGCAGGGGAATCGCCCTTCGAATAAGGAGATATGTAATAACTCCGACGAGCACTCGTTTTTTCCGTCTGAGCTTCCGGCGAGACCAAGAACAGAGGTGAAATCGGGGAATTCGATTGGAAGGGGATCAGAAAATTTGAAGGGGGTAGAGGGTATTGGTAGGCCGGAGAGAATTCTTCGCGAAATCGTCTCGGAGTCGATCTCAATCATGTCTCAAATAGTTCAGGAGCTTCCTGATGAAACACTTTCATCAATCAAAGATTACTTGAAAGATCTGATTGCTATGCCTGACAAGAGAGACGAATTGTCGTCTCTCCAAAAGCGGTTAGAGCGAAGATCCGATCTAACTAAGGAAACTCTTTCAAAGTGTCACAAAGCACAGCTTGAAATTTTAGTTTCAGTGAAGATGGGGCTAGCGAGTTTCATATCTGCGAAAAGTAGGTGCTCGATGGCTGAGCTTGTGGACATTTTCTTGTTTCTGAAATGCAGGAACTGCAAGAGTGTAATCCCAGTTGATGATTGTGACTGCAAAATCTGCTCAGCCAACCAGGGATTTTGCAGCTCATGTATGTGCCCCATCTGTTTGAACTTTGATTGTGCAAACAATACTTGTAGTTGGGTTGGTTGTGATGTCTGCTCCCATTGGTGCCATGCTGCCTGTGGTATTGAGAAGAATCTCATCCGGCCTGGTCCGAGCCTCAAAGGTCCATCGGGGACCACGGAGATGCAGTTCCATTGCATTGCTTGTAATCATGCTTCAGAGATGTTTGGATTTGTGAAGGATGTTTTTATGTATTGTGCAAAGAACTGGGGTCTAGAAACCTTGATGAAGGAGCTTGAGTGTGTGAAGAGGATCTTCATTGGAAGTGATGACTACAAAGGCAAGGATTTGTATATTAAAGCTGCTCAGATGCTGGCCAAGCTTGAAAGGAAAGCAATTGCTCCTTGGGAGGCCTGCAATATCATTCTTGAATACTTCAATTATGGTACATCGGAGATTTCAACTTCTGGGGTATTCTCAGAGAAGTTAGGAACAACTGATACGACCAGCCTGTCGAAAGACGGGATGTCTCTTCCTCAAACGGGGTCCCTACCTTCAACATACGTCATGCAGAAAAACACCCCATCTAGGCCACATCGTGACTTGAGCTCTGGTGATCTTCGACGGAACGATCTCAAAGTCTCCATCACCAGCGACTTGAATGTAGACGATGAGTTCCAATTTGGAGCGTTGACAAAGAAAGCGGGCCTTGAGAGCTTGGAAAGCATTGTAAGAATCAAGAAAGCAGAGGCAGGAATGTTTCAGAACAAGGCAGATGAGGCACGGAGAGAGGCTGAACGACTGAGACAAATAATCGTTGCAAAGACAGAGAAACTCGACGAAGACTATGCCGAAAAGATCGGGAAGTTGTGCTTGAAAGAGGCGGAAGATAGACGAAGGAAGAAGGTGGAGGAGCTGAAGGTATTGGAGAACTCTCAAATAGATTATTACAACATGAAGAAGAGAATGCAGAAGGAGATATCTGGATTGTTGGAGAGGATGGAAGTGACAAAAAAGCAAATAGTGTGA 2361 44.85 MFEAKDLASDGENSRTKLLRHVSERIRENSDTKSGFSDKGIVAFREESISARIGNSGSSQELTLSYLCDKDKGFAPSFEKGSYKGKEVLFSENSNEDDKWVERDFLNLNSNRGNQSKREVEEEIERENRGKKPKLETLNLSLALPEVSLSLTASNALQNEDPPPVRSKPCRSLQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHNPSCSLTRNSTENYEYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGVALSNHGGGLNSLLQGNRPSNKEICNNSDEHSFFPSELPARPRTEVKSGNSIGRGSENLKGVEGIGRPERILREIVSESISIMSQIVQELPDETLSSIKDYLKDLIAMPDKRDELSSLQKRLERRSDLTKETLSKCHKAQLEILVSVKMGLASFISAKSRCSMAELVDIFLFLKCRNCKSVIPVDDCDCKICSANQGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHAACGIEKNLIRPGPSLKGPSGTTEMQFHCIACNHASEMFGFVKDVFMYCAKNWGLETLMKELECVKRIFIGSDDYKGKDLYIKAAQMLAKLERKAIAPWEACNIILEYFNYGTSEISTSGVFSEKLGTTDTTSLSKDGMSLPQTGSLPSTYVMQKNTPSRPHRDLSSGDLRRNDLKVSITSDLNVDDEFQFGALTKKAGLESLESIVRIKKAEAGMFQNKADEARREAERLRQIIVAKTEKLDEDYAEKIGKLCLKEAEDRRRKKVEELKVLENSQIDYYNMKKRMQKEISGLLERMEVTKKQIV 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8097008 8101524 + Lsi09G007100.1 Lsi09g00710 670323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00710 786 MobiDBLite consensus disorder prediction 611 642 - -
Lsi09g00710 786 Pfam Coiled-coil region of Oberon 651 775 IPR032535 -
Lsi09g00710 786 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 785 IPR004082 -
Lsi09g00710 786 Pfam PHD - plant homeodomain finger protein 427 548 IPR032881 -
Lsi09g00710 786 Coils Coil 695 722 - -
Lsi09g00710 786 CDD PHD_OBE1_like 454 513 - -
Lsi09g00710 786 Coils Coil 764 784 - -
Lsi09g00710 786 PANTHER PROTEIN OBERON 3 1 785 - -
Lsi09g00710 786 Coils Coil 736 756 - -
Lsi09g00710 786 MobiDBLite consensus disorder prediction 111 132 - -
Lsi09g00710 786 MobiDBLite consensus disorder prediction 283 311 - -
Lsi09g00710 786 MobiDBLite consensus disorder prediction 611 650 - -
Lsi09g00710 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 682 702 IPR004082 -
Lsi09g00710 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 721 743 IPR004082 -
Lsi09g00710 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 534 553 IPR004082 -
Lsi09g00710 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 391 406 IPR004082 -
Lsi09g00710 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 417 438 IPR004082 -
Lsi09g00710 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 337 359 IPR004082 -
Lsi09g00710 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 461 481 IPR004082 -
Lsi09g00710 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 376 391 IPR004082 -
Lsi09g00710 786 MobiDBLite consensus disorder prediction 115 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00710 - - - csv:101209125 1446.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02559 Lsi-Chr2:32066689 Lsi09g00710 Lsi-Chr9:8097008 4.70E-11 dispersed
Lsi09g00710 Lsi-Chr9:8097008 Lsi10g00054 Lsi-Chr10:875132 1.47E-71 dispersed
Lsi09g00710 Lsi-Chr9:8097008 Lsi11g01358 Lsi-Chr11:22188371 3.91E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00710 Lsi_Chr09 FPKM 5.265002 5.205396 12.549954 11.607613 4.403234 4.145676 4.479064 27.680199 27.289867 26.595934