Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00715 ATGGCTGGGAAGCATGGAGAAGTCATGTGGCCAAGATTGGTTGCTAATAAGATTTTGAAGAAGAGATTGGGAAGCAATAACTTTGTGGCAGATATTCCAAGCAACAATAATTCAGAAGCTTTGCTTGAGATTCCACTCTTTGGTCAATCTTCTTCAGTCCCAAATGCCTTCTATAAACCTCCCGTCCAAAATTACAAGGTTTTTGTTAGTACATGGAATGTTGGAGGAGTTGCACCAAATGAAGATTTAGACATGGAGGATTGGGTGGATATTTCTTGTGACATCTATGTTTTTGGTTTCCAAGAAATTGTGCCTTTGAAAGCCTCAAATGTATTTGGATCAGAGAATAGAAAAATATGTTCAGAATGGAATTCAATGATAAGAGAAGCTTTGAAGAAGAAAGTGAAACAAAATTTCAAGTGTATAATAAGCAAACAAATGGTTGGGATAATGATCTCAATTTGGGTTCGAAGTGATCTTCATCCATTCATTCGAAGTCCAAGTGTATCTTGCATTGGTTGTGGCATCATGAGCTGCCTTGGCAACAAGGGATCAGTATCAGTTAGATTTCGATTGCATGAAACAAGTTTCTGTTTTGTGTGCACTCATTTGGCATCAGGAGGAAAAGAGGGAGATGAAAAGAATAGAAATCAAAATTCAATTATAAAAGACAAAGTTTCTTTACCAGAAGCAACTACAAGATTGTTGGTAGAAAGAAAGGATTGGGACACTTTATTACAAAATGATCAGCTAAAGATGGAGATGATGGATGGTCAAGTATTGGAAGGATGGGAAGAAGGGAACATCAAATTTGGGCCAACTTACAAATATTATAGAAATTCAGAGAAAGAAATGTGTGACAGAATTATATGGAATGGAAAGGGGCTAAAACAAATATCATACAATCGAGGAGAATCAAATCTATCCGATCATAGACCTGTAATGGCCATTTTTACGGCAGAAGTTGAAACCTTGACAAATTTGAAAACTTTGCGTAGCTTCTTTCTATCAAACAGATTTGAGCAGCTGAATAATTCTAATACTCCAGTTGTCGAGGACAAAGACGAAGACGAAGACGGGAACGAGGAGATTTTTTCAACGGTTAATTTCGTATGA 1116 36.83 MAGKHGEVMWPRLVANKILKKRLGSNNFVADIPSNNNSEALLEIPLFGQSSSVPNAFYKPPVQNYKVFVSTWNVGGVAPNEDLDMEDWVDISCDIYVFGFQEIVPLKASNVFGSENRKICSEWNSMIREALKKKVKQNFKCIISKQMVGIMISIWVRSDLHPFIRSPSVSCIGCGIMSCLGNKGSVSVRFRLHETSFCFVCTHLASGGKEGDEKNRNQNSIIKDKVSLPEATTRLLVERKDWDTLLQNDQLKMEMMDGQVLEGWEEGNIKFGPTYKYYRNSEKEMCDRIIWNGKGLKQISYNRGESNLSDHRPVMAIFTAEVETLTNLKTLRSFFLSNRFEQLNNSNTPVVEDKDEDEDGNEEIFSTVNFV 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8186455 8194357 + Lsi09G007150.1 Lsi09g00715 670328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00715 371 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 226 343 - -
Lsi09g00715 371 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 13 219 - -
Lsi09g00715 371 SUPERFAMILY DNase I-like 54 323 IPR036691 -
Lsi09g00715 371 Gene3D Endonuclease/exonuclease/phosphatase 56 347 IPR036691 -
Lsi09g00715 371 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 226 343 IPR045849 GO:0004445|GO:0046855
Lsi09g00715 371 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 13 219 IPR045849 GO:0004445|GO:0046855
Lsi09g00715 371 SMART i5p_5 63 326 IPR000300 GO:0016791|GO:0046856
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00715 - - - csv:101210216 663.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00715 Lsi-Chr9:8186455 Lsi03g02084 Lsi-Chr3:32138058 6.19E-69 dispersed
Lsi09g00715 Lsi-Chr9:8186455 Lsi02g02269 Lsi-Chr2:29276518 4.21E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g547 . . . . . . . . . . . . . . . . Cpe01g01861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02242 . Cma04g02149 Cma15g00882 Car04g02082 Car15g00829 Cpe13g00433 . Bhi12g00977 . . . . . Lcy10g1586 Cla01g00661 Cam01g0692 Cec01g0684 Cco01g0712 Clacu01g0680 Cmu01g0655 Cre09g1851 Lsi09g00715 Csa05g01288 . Cme09g01292
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013390 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00715 Lsi_Chr09 FPKM 24.298868 22.626122 22.24852 21.743717 19.372934 20.257208 20.840805 42.021053 43.221573 46.325081