Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00717 ATGGATGGTGATGCGTTAAACATGCGTAATTGGGGTTACTATGAACCATCCTTGAAAGCGCATCATCTTGGTCTGCAGCTCATGTCCACAATTGGTGAGCGAGATGTGAAACATTTTCTGCCTGGACGGGACCCTTCTGCTATTGTTAACATGAATGCAGCATTTCATTCACGGGAGTCTGTTGTTTCTGAAGCACCAGTACCGACAAACTGGGCGAGGGATGGTTGGATAAATCATCAACGAGACAAGCTTCTCAATATGTTATCCCCAACTACTAGTTATTCTCTGCTTGCAGAAACGTCAGCCTCACAACCCTTGCAAATGTTACAGCCACATGACACATCAAGAGATGAAATGGTCCTCAAGATTGAAGAACCACCCGTGAAGAAGGGAACTAAACAACCAAAGAAACGACAGAATGGGGGTGCTCCCAAAACTCCAAAAGCAAAGAAGCCTCGGAAGTCCAAAAATAATGATCCTTCAGTTCAGCAGGTGAAGGCACCAAAAAAGAAGATGGAACTTGTTATAAATGGGTTTGATATGGATATATCTAACATCCCAATTCCAGTATGCTCTTGCACTGGAACTCCTCACCAATGTTATAGATGGGGCTATGGTGGCTGGCAATCAGCTTGTTGTACCACAAATTTATCTCTACATCCTTTGCCCATGAGTGAGAAGCGTCGAGGTGCTAGAATTGCGGGTCGAAAAATGAGTCAAGGTGCTTTTAAGAAGGTTTTGGAGAAACTAGCAGCTCAAGGCTATAACTTTTCTAACCCAATTGATTTAAGAAGCCATTGGGCAAGGCATGGGACCAATAAGTTTGTCACCATCAGCAATCTTGGGGTAGCTATAGCTGTTCTCATGGATGACGATGCGTTAAACATGCGCAATTGGGGCTATTATGAGCCGTCCTTTAAAGGGCACCTCGGCCTGCAGCTCATGTCCACCATTTCTGAGCGGGACATGAAACATTTCTTACCAGGCCGTGATCCTTCTGTTATGGTTAATGCTAATGGATCGTTCCATCCTCGGGATTGCGTTGTTTCGGAAGCACCGGTGCATATGAACTATGTGAGGGACAATTGGGGGGGTAACCCCAGAGATAGGTTTCTTAATATGTTGCCTGCCAATCACAACTATCCTGTTATTCCAGAAACTTCAGGAGCTCACTCCTTGCAGATCTTGCAACCACCCTCTTCGTCTAGGGATGAAATAGCAGCAAGTAGAGTTGAAGAGCCTCCAGTGAAGAAGGAAGGTGGGAAAGCAAAGAAAAGACAGAGTAGTGAGGGTGGCCCCAAAACCCCCAAAGCTAAAAAACCGAGGAAACTGAAAGATACTAGCACGGCTGTGCAGCGTGTGAAACCACCAAAGAAGAATATTGATCTTGTTATAAATGGGATTGATATGGACATTTCAAGTATTCCAATCCCGGTCTGCTCTTGCACTGGAGCTCCTCATCAATGTTATAGGTGGGGATGTGGTGGTTGGCAGTCTGCTTGTTGTACTACCAACATATCAACTTATCCTTTGCCCATGAGTGACAAAAGACGTGGGGCGAGGATAGCTGGGCGAAAAATGAGTCAGGGTGCGTTTAAGAAGGTACTCGAGAAACTAGCAGCTGATGGCTATAATTTTGCTAACCCAATCGATTTGAGGACTCACTGGGCGAGACATGGTACTAATAAGTTTGTCACAATCAGGTAG 1707 45.17 MDGDALNMRNWGYYEPSLKAHHLGLQLMSTIGERDVKHFLPGRDPSAIVNMNAAFHSRESVVSEAPVPTNWARDGWINHQRDKLLNMLSPTTSYSLLAETSASQPLQMLQPHDTSRDEMVLKIEEPPVKKGTKQPKKRQNGGAPKTPKAKKPRKSKNNDPSVQQVKAPKKKMELVINGFDMDISNIPIPVCSCTGTPHQCYRWGYGGWQSACCTTNLSLHPLPMSEKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFSNPIDLRSHWARHGTNKFVTISNLGVAIAVLMDDDALNMRNWGYYEPSFKGHLGLQLMSTISERDMKHFLPGRDPSVMVNANGSFHPRDCVVSEAPVHMNYVRDNWGGNPRDRFLNMLPANHNYPVIPETSGAHSLQILQPPSSSRDEIAASRVEEPPVKKEGGKAKKRQSSEGGPKTPKAKKPRKLKDTSTAVQRVKPPKKNIDLVINGIDMDISSIPIPVCSCTGAPHQCYRWGCGGWQSACCTTNISTYPLPMSDKRRGARIAGRKMSQGAFKKVLEKLAADGYNFANPIDLRTHWARHGTNKFVTIR 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8228722 8234770 - Lsi09G007170.1 Lsi09g00717 670330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00717 568 Pfam GAGA binding protein-like family 2 278 IPR010409 -
Lsi09g00717 568 Pfam GAGA binding protein-like family 289 568 IPR010409 -
Lsi09g00717 568 SMART GAGA_bind_2 1 279 IPR010409 -
Lsi09g00717 568 SMART GAGA_bind_2 289 568 IPR010409 -
Lsi09g00717 568 PANTHER - 1 279 IPR010409 -
Lsi09g00717 568 PANTHER - 289 568 IPR010409 -
Lsi09g00717 568 MobiDBLite consensus disorder prediction 406 449 - -
Lsi09g00717 568 PANTHER PROTEIN BASIC PENTACYSTEINE1-RELATED 289 568 - -
Lsi09g00717 568 PANTHER PROTEIN BASIC PENTACYSTEINE1-RELATED 1 279 - -
Lsi09g00717 568 MobiDBLite consensus disorder prediction 124 169 - -
Lsi09g00717 568 MobiDBLite consensus disorder prediction 394 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00717 - - - cmax:111489086 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00717 Lsi-Chr9:8228722 Lsi11g01148 Lsi-Chr11:20002856 1.51E-38 dispersed
Lsi09g00717 Lsi-Chr9:8228722 Lsi08g01338 Lsi-Chr8:21684989 9.05E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g554 . . . . . . . . . . . . . . . . Cpe01g01864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02245 Cmo15g00916 Cma04g02151 Cma15g00880 Car04g02085 Car15g00827 Cpe13g00435 . Bhi12g00980 . . . Hepe02g2589 . . Cla01g00663 Cam01g0694 Cec01g0686 Cco01g0714 Clacu01g0682 Cmu01g0657 Cre09g1849 Lsi09g00717 Csa05g01290 . Cme09g01290
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00717 . 289 568 BBR/BPC Transcription factor family AT2G01930 56.4 1.5e-82 303.1
Lsi09g00717 . 450 568 BBR/BPC Transcription factor family AT2G35550 59.7 6.5e-41 164.5
Lsi08g01338 . 228 342 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Lsi11g01148 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
Lsi08g01338 . 236 342 BBR/BPC Transcription factor family AT1G68120 57.0 3.0e-37 152.5
Lsi11g01148 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.2 3.7e-84 308.5
Lsi11g01148 . 1 313 BBR/BPC Transcription factor family AT4G38910 59.7 1.3e-70 263.5
Lsi08g01338 . 89 342 BBR/BPC Transcription factor family AT5G42520 57.3 3.2e-69 258.8
Lsi09g00717 . 450 568 BBR/BPC Transcription factor family AT2G35550 59.7 6.5e-41 164.5
Lsi08g01338 . 228 342 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-38 156.8
Lsi11g01148 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 2.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002345 4 2 3 4 4 1 2 1 1 0 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 2 5 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25894 PF06217 GAGA_bind 7.10E-108 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00717 Lsi_Chr09 FPKM 23.672192 22.036997 18.608763 18.651068 19.318996 19.706339 19.489676 22.298529 21.225294 22.030315