Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00719 | ATGTTGAAACCTTCAGCTTCTTCTTCTTCTAGTGGCCTTCCCCTTCCTCCTCCTCCTCATCTTCTTCTTCCCAATTCTGACCATGCCATCACCAGCAAAAGAAAAAGAAGACCTGCAGGCACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCCCCAAAAACGCTTCTTGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATCTTCAGATGCACCGGCGCCGCCACAAAGTTCCTTGGAAACTACTGAAAAGAGCGGAGACGGCGGAGAGTGTGAAAAAAAAGGTTTTTGTTTGTCCGGAGCCGACGTGTCTCCACCATGACCCTTGCCATGCCCTTGGTGATCTCGTCGGTATAAAAAAGCACTTCCGTAGAAAGCACAGCAACCAAAAGCAGTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAGCATCAAGACACTTGCAATCTCCGCCAGATGAGGTCCGATCAGTTGCAGCCGGTGGCACAGCCGTTACAACCACCGCTATTATTGCAACCCTACTCACGATCAGTTTCTTACACCGGCGCTTCCACCAGCAACGATCGTAGCTTTCAAATGGCTACTCCATTACGAGGGTTTCCAATCTTATCATCAAACTCAGATCGAAACATCAACATTAATTTACCTGATCACCACGATCTCGAGCTTCATCTCTCTTCTCCAAGCTCAGCCTTTCTAAAGCTCTCAATTGGGTCCAACAAGGATCCCAACGACGAGCGTCAGCTCGAGCTGGCGATAGCGGAGAAGGCGTATGCAGATGAAGCAAGACAAGAGGCAAAACGACAAATCGAAATCGCCGAGGTCGAGTTTGCAAATGCCAAAATGATACGACAGCAAGCTCAAGCGGAGTTGGAGAAGGCAAGAATCTTGAAGGAAGAGGCTAGCCGGAAAATGAGCTCCACCATTATGGAAATCACTTGCCAAACTTGCCGATTGCACTTTCATATGAGCTCCGCCGTAGCCGAGGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCAACGACAGAAGGTGATGGAGAGTGA | 1170 | 48.63 | MLKPSASSSSSGLPLPPPPHLLLPNSDHAITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAESVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNLRQMRSDQLQPVAQPLQPPLLLQPYSRSVSYTGASTSNDRSFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKDPNDERQLELAIAEKAYADEARQEAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHMSSAVAEETSLAISYMSSATTEGDGE | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8267896 | 8269723 | + | Lsi09G007190.1 | Lsi09g00719 | 670332 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00719 | 389 | PANTHER | OS03G0310200 PROTEIN | 24 | 272 | IPR039288 | GO:0009630 | |
Lsi09g00719 | 389 | Gene3D | Classic Zinc Finger | 40 | 108 | - | - | |
Lsi09g00719 | 389 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
Lsi09g00719 | 389 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Lsi09g00719 | 389 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
Lsi09g00719 | 389 | Gene3D | Classic Zinc Finger | 126 | 202 | - | - | |
Lsi09g00719 | 389 | Coils | Coil | 297 | 345 | - | - | |
Lsi09g00719 | 389 | PANTHER | OS03G0310200 PROTEIN | 287 | 389 | IPR039288 | GO:0009630 | |
Lsi09g00719 | 389 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 24 | 272 | - | - | |
Lsi09g00719 | 389 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 161 | IPR036236 | - | |
Lsi09g00719 | 389 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 287 | 389 | - | - | |
Lsi09g00719 | 389 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Lsi09g00719 | 389 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
Lsi09g00719 | 389 | SMART | c2h2final6 | 141 | 168 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00257 | Lsi-Chr2:2194024 | Lsi09g00719 | Lsi-Chr9:8267896 | 1.73E-138 | dispersed | |
Lsi06g01642 | Lsi-Chr6:26727354 | Lsi09g00719 | Lsi-Chr9:8267896 | 4.06E-18 | dispersed | |
Lsi09g00719 | Lsi-Chr9:8267896 | Lsi01g00694 | Lsi-Chr1:5544880 | 7.81E-74 | dispersed | |
Lsi09g00719 | Lsi-Chr9:8267896 | Lsi03g02034 | Lsi-Chr3:31704220 | 8.48E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25895 | None | None | None | None | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00719 | K25871 | - | csv:101210468 | 660.988 |