Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00719 ATGTTGAAACCTTCAGCTTCTTCTTCTTCTAGTGGCCTTCCCCTTCCTCCTCCTCCTCATCTTCTTCTTCCCAATTCTGACCATGCCATCACCAGCAAAAGAAAAAGAAGACCTGCAGGCACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCCCCAAAAACGCTTCTTGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATCTTCAGATGCACCGGCGCCGCCACAAAGTTCCTTGGAAACTACTGAAAAGAGCGGAGACGGCGGAGAGTGTGAAAAAAAAGGTTTTTGTTTGTCCGGAGCCGACGTGTCTCCACCATGACCCTTGCCATGCCCTTGGTGATCTCGTCGGTATAAAAAAGCACTTCCGTAGAAAGCACAGCAACCAAAAGCAGTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAGCATCAAGACACTTGCAATCTCCGCCAGATGAGGTCCGATCAGTTGCAGCCGGTGGCACAGCCGTTACAACCACCGCTATTATTGCAACCCTACTCACGATCAGTTTCTTACACCGGCGCTTCCACCAGCAACGATCGTAGCTTTCAAATGGCTACTCCATTACGAGGGTTTCCAATCTTATCATCAAACTCAGATCGAAACATCAACATTAATTTACCTGATCACCACGATCTCGAGCTTCATCTCTCTTCTCCAAGCTCAGCCTTTCTAAAGCTCTCAATTGGGTCCAACAAGGATCCCAACGACGAGCGTCAGCTCGAGCTGGCGATAGCGGAGAAGGCGTATGCAGATGAAGCAAGACAAGAGGCAAAACGACAAATCGAAATCGCCGAGGTCGAGTTTGCAAATGCCAAAATGATACGACAGCAAGCTCAAGCGGAGTTGGAGAAGGCAAGAATCTTGAAGGAAGAGGCTAGCCGGAAAATGAGCTCCACCATTATGGAAATCACTTGCCAAACTTGCCGATTGCACTTTCATATGAGCTCCGCCGTAGCCGAGGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCAACGACAGAAGGTGATGGAGAGTGA 1170 48.63 MLKPSASSSSSGLPLPPPPHLLLPNSDHAITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAESVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNLRQMRSDQLQPVAQPLQPPLLLQPYSRSVSYTGASTSNDRSFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKDPNDERQLELAIAEKAYADEARQEAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHMSSAVAEETSLAISYMSSATTEGDGE 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8267896 8269723 + Lsi09G007190.1 Lsi09g00719 670332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00719 389 PANTHER OS03G0310200 PROTEIN 24 272 IPR039288 GO:0009630
Lsi09g00719 389 Gene3D Classic Zinc Finger 40 108 - -
Lsi09g00719 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lsi09g00719 389 MobiDBLite consensus disorder prediction 1 48 - -
Lsi09g00719 389 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lsi09g00719 389 Gene3D Classic Zinc Finger 126 202 - -
Lsi09g00719 389 Coils Coil 297 345 - -
Lsi09g00719 389 PANTHER OS03G0310200 PROTEIN 287 389 IPR039288 GO:0009630
Lsi09g00719 389 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 24 272 - -
Lsi09g00719 389 SUPERFAMILY beta-beta-alpha zinc fingers 61 161 IPR036236 -
Lsi09g00719 389 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 287 389 - -
Lsi09g00719 389 SMART c2h2final6 105 135 IPR013087 -
Lsi09g00719 389 SMART c2h2final6 62 84 IPR013087 -
Lsi09g00719 389 SMART c2h2final6 141 168 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00257 Lsi-Chr2:2194024 Lsi09g00719 Lsi-Chr9:8267896 1.73E-138 dispersed
Lsi06g01642 Lsi-Chr6:26727354 Lsi09g00719 Lsi-Chr9:8267896 4.06E-18 dispersed
Lsi09g00719 Lsi-Chr9:8267896 Lsi01g00694 Lsi-Chr1:5544880 7.81E-74 dispersed
Lsi09g00719 Lsi-Chr9:8267896 Lsi03g02034 Lsi-Chr3:31704220 8.48E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25895 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00719 K25871 - csv:101210468 660.988