Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00720 ATGGAAAGAAACATCTTTCAGCTTTCTCTTCTTCCTCTTTCTTTGCCAGTGATCTTTATCTTATTTGCTTTGGCTTCTTCAGCAGAACAAGAGGTTGTGACTTCAATAAAAACTGATGCTGCAGCTCTTCTTAAGTTCAAGGATTTGATTGACAAGGACCCAAATGGAGTGTTGTCCAGTTGGAAGCTTGAAAACAATCCATGTTCGTGGTATGGAATTTCATGTCAATCTAAACGAGTGGTTTCTGTTGATCTGAGTGGCTGTAATCTTGCAGGGAATGTTTATTTTGATCCTCTGTCTTCTATGGATATGTTGATGGCTTTGAATTTGTCTACAAATTCTTTCGCTATAAACTCAACTACTTTGCTTCAGCTTCCTTATAATTTGCAGCAACTTGAGCTCTCTCTTGCCAAAGTTGTAGGTAGTGTGCCTGAGAATCTTTTCTCAAAGTGTCCAAACCTTGTGTTTGTGGATCTTTCATTCAACAATTTCACAGGCTATCTGCCTGAAAATCTTCTGTTGAATGCTAATAAGCTTCAAGATCTTGATCTCTCTTACAATAATCTAACTGGGTCGATCTCAGGGTTGAGAATTAATGAGAATTCTTGCAACTCTTTGTTGCGGGTTGAACTTTCGGCAAATCGAATCGTCGGTTCGATTCCAAGTTCCATTTCAAACTGCACGAATCTGCAAACACTTGGTTTGTCATACAATTTTCTCAGTGGGGAAATCCCAAGATCTTTAGGGGAACTCAGTAGTTTACAGAGGGTCGATATATCTCATAATCAGCTCACTGGTTGGCTTCCTTCTGATTGGAGAAATGCCTGCAATTCCCTTCAAGAACTAAAGCTTTGTTACAACAATATTTCTGGTGTAATTCCTGCTTCCTTCTCTGCTTGCTCTTGGCTACAAATTCTGGATCTTTCAAACAACAACATGTCTGGTCCTTTACCAGATTCCATCTTCAAGAATCTTGTCTCTTTACAGAGCTTGCTATTGAGTAATAATGTAATCTCTGGACCATTGCCTTCATCCATATCTCACTGCAAGAAACTTCAGCTTGTAGACTTAAGTTCCAATAGAATTTCTGGTTTGATCCCACCAGGTATATGCCCAGGTGCTGAGTCACTCCAGGAACTGAAAATGCCAGACAATCTCATCATAGGAGGAATCCCACCTGAACTCTCACTGTGTTCACAGTTAAAGACAATTGATTTTAGTTTAAACTATCTGAATGGATCCATACCTGCAGAGCTTGGAAGGCTTCAGAATCTTGAACAGCTGATAGCATGGTTTAATAGCTTAGAAGGGAAAATCCCACCAGAATTGGGGAAGTGTAGAAGCTTGAAGGATGTTATACTAAATAACAATCGTTTAAGTGGCGAAATCCCCACTGAATTATTCAGTTGTAGCAACCTTGAATGGGTTTCACTCACGAGTAATGAACTCACTGGTGAGGTCCCAAAAGAGTTTGGTCTTTTGTCAAGGCTGGCTGTGCTGCAACTCGGGAACAATAGCTTGAGTGGTCAGATACCGCCGGAGTTGGCAAACTGCAGCACTTTGGTTTGGTTGGATTTGAACAGCAACAAGCTTACAGGAGAAATCCCACCTAGACTTGGGAGGCAGCTTGGAGCCAAATCATTGAATGGGATTCTTTCTGGAAACACTCTAGTGTTCGTCCGAAATGTTGGGAATTCGTGTAAAGGAGTTGGGGGTTTGTTAGAGTTTGCTGGAATCAGACCTGAAAGACTACAGCAGGAACCAACATTAAAGACCTGTGATTTCACTAGACTGTACTCTGGTCCGGTCCTCAGTCTGTTTACAAAGTACCAAACTTTGGAGTACTTGGATCTTTCTTACAATGAGCTTCGTGGGAGAATACCAGAAGAGTTTGGAGATATGGTTGCTTTGCAGGTTCTCGAATTATCGCACAATCAACTTTCTGGCGAGATTCCAGCATCCTTTGGCCGCCTAAAGAACTTAGGAGTGTTTGATGCATCACATAACAGACTGCAGGGTCAAATTCCAGATTCATTCTCAAACTTATCATTCTTAGTGCAAATTGATCTATCTTACAATGAACTAACAGGGCGAATTCCATCAAGGGGACAGCTCAGTACACTGCCTGCAAGTCAGTATGCAAACAATCCAGGACTCTGTGGAGTTCCCTTGCCTGAATGCCAGAGTGATGACCAGCCGCAGACAAGTCCTACTGTAGATGCTGGCAAAGGAAGAACAAAGCCAGAAGTAGGGTCATGGGTTAACAGTATTGTTTTAGGTGTTCTTATTTCCATTGCCTGTGTCTGCATTTTGATTGTATGGGCCATTGCCATGCGTGCAAGACGAAAAGAAGCAGAGGAAGTGAAGATGCTTAATAGTTTACAAGCAATACATGCCCCTACTACATGGAAAATTGACAAAGAGAAAGAGCCCCTGAGTATCAATGTGGCAACTTTCCAAAGACAACTAAGGAAGCTCAAGTTCTCCCAACTGATTGAAGCTACTAATGGCTTCTCAGCAGAAAGTCTCATAGGGAGTGGCGGGTTCGGTGAAGTGTTTAAAGCAACACTAAAGGATGGATCAAGTGTTGCAATCAAGAAACTGATACGTCTTAGTTGCCAGGGAGATCGTGAATTCATGGCGGAGATGGAAACTTTAGGAAAGATCAAACATGGAAACTTAGTACCTCTTCTGGGTTACTGCAAAATAGGTGAGGAGAGGCTTCTAGTGTATGAGTTTATGGAGTTTGGTAGCCTAGAAGAGATGCTTCACGGAAGAGCAAAGATGCAAGATCGAAGAATTCTAACATGGGATGAAAGGAAAAAGATTGCCAGAGGTGCTGCTAAAGGACTTTGTTTCCTACACCACAACTGCATTCCACACATAATACACAGAGACATGAAATCCAGCAATGTACTCCTGGACCATGATTTAGAAGCAAGAGTTTCAGATTTCGGAATGGCAAGGCTGATAAGTGCTCTTGACACCCATCTGAGTGTAAGCACACTTGCAGGCACTCCTGGTTATGTCCCTCCTGAGTACTACCAAAGCTTCAGGTGCACAGCAAAAGGCGACGTCTATTCGTTCGGTGTCGTCCTCTTAGAACTCTTGACAGGGAAACGACCAACCGATAAGGAGGATTTTGGGGACACCAACTTGGTCGGATGGGTCAAAATGAAAGTGAATGATGGAAAACAAATGGAAGTGATTGATCCAGAGTTGCTGTCAGTAACCAAAACAAGTGATGAATCAGAAGCAGAAGAGGTTAAAGAAATGATTAGATATTTGGAGATAACTCTTCAGTGTGTAGAAGAGTTTCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTGACCCTGCTGCGAGCGTTGATGCCGGGATCAACCAATGGAAGCAGCAACAGTGCTTGA 3408 42.4 MERNIFQLSLLPLSLPVIFILFALASSAEQEVVTSIKTDAAALLKFKDLIDKDPNGVLSSWKLENNPCSWYGISCQSKRVVSVDLSGCNLAGNVYFDPLSSMDMLMALNLSTNSFAINSTTLLQLPYNLQQLELSLAKVVGSVPENLFSKCPNLVFVDLSFNNFTGYLPENLLLNANKLQDLDLSYNNLTGSISGLRINENSCNSLLRVELSANRIVGSIPSSISNCTNLQTLGLSYNFLSGEIPRSLGELSSLQRVDISHNQLTGWLPSDWRNACNSLQELKLCYNNISGVIPASFSACSWLQILDLSNNNMSGPLPDSIFKNLVSLQSLLLSNNVISGPLPSSISHCKKLQLVDLSSNRISGLIPPGICPGAESLQELKMPDNLIIGGIPPELSLCSQLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKIPPELGKCRSLKDVILNNNRLSGEIPTELFSCSNLEWVSLTSNELTGEVPKEFGLLSRLAVLQLGNNSLSGQIPPELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPASFGRLKNLGVFDASHNRLQGQIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSDDQPQTSPTVDAGKGRTKPEVGSWVNSIVLGVLISIACVCILIVWAIAMRARRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRAKMQDRRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVNDGKQMEVIDPELLSVTKTSDESEAEEVKEMIRYLEITLQCVEEFPSKRPNMLQVVTLLRALMPGSTNGSSNSA 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8278768 8282175 - Lsi09G007200.1 Lsi09g00720 670333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00720 1135 SUPERFAMILY L domain-like 595 723 - -
Lsi09g00720 1135 Gene3D Phosphorylase Kinase; domain 1 799 913 - -
Lsi09g00720 1135 Gene3D Ribonuclease Inhibitor 176 727 IPR032675 -
Lsi09g00720 1135 MobiDBLite consensus disorder prediction 724 746 - -
Lsi09g00720 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672|GO:0006468
Lsi09g00720 1135 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 24 1123 - -
Lsi09g00720 1135 Pfam Protein kinase domain 840 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00720 1135 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Lsi09g00720 1135 ProSitePatterns Protein kinases ATP-binding region signature. 844 867 IPR017441 GO:0005524
Lsi09g00720 1135 SMART LRR_typ_2 325 349 IPR003591 -
Lsi09g00720 1135 SMART LRR_typ_2 251 274 IPR003591 -
Lsi09g00720 1135 SMART LRR_typ_2 422 446 IPR003591 -
Lsi09g00720 1135 SMART LRR_typ_2 447 470 IPR003591 -
Lsi09g00720 1135 SMART LRR_typ_2 634 658 IPR003591 -
Lsi09g00720 1135 SMART LRR_typ_2 494 518 IPR003591 -
Lsi09g00720 1135 SUPERFAMILY L domain-like 63 274 - -
Lsi09g00720 1135 ProSiteProfiles Protein kinase domain profile. 838 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00720 1135 Pfam Leucine rich repeat 206 264 IPR001611 GO:0005515
Lsi09g00720 1135 Pfam Leucine rich repeat 317 362 IPR001611 GO:0005515
Lsi09g00720 1135 Pfam Leucine rich repeat 272 312 IPR001611 GO:0005515
Lsi09g00720 1135 Pfam Leucine rich repeat 606 647 IPR001611 GO:0005515
Lsi09g00720 1135 Pfam Brassinosteroid receptor island domain 549 607 IPR045381 -
Lsi09g00720 1135 SMART serkin_6 838 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00720 1135 SUPERFAMILY RNI-like 209 539 - -
Lsi09g00720 1135 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Lsi09g00720 1135 CDD STKc_IRAK 844 1120 - -
Lsi09g00720 1135 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 24 1123 - -
Lsi09g00720 1135 SUPERFAMILY Protein kinase-like (PK-like) 819 1120 IPR011009 -
Lsi09g00720 1135 Gene3D Ribonuclease Inhibitor 38 148 IPR032675 -
Lsi09g00720 1135 Gene3D - 552 608 - -
Lsi09g00720 1135 Gene3D Transferase(Phosphotransferase) domain 1 914 1132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01104 Lsi-Chr1:9118453 Lsi09g00720 Lsi-Chr9:8278768 0 dispersed
Lsi05g01245 Lsi-Chr5:20257695 Lsi09g00720 Lsi-Chr9:8278768 9.93E-59 dispersed
Lsi06g01441 Lsi-Chr6:24936447 Lsi09g00720 Lsi-Chr9:8278768 1.74E-150 dispersed
Lsi09g00720 Lsi-Chr9:8278768 Lsi02g00532 Lsi-Chr2:4619376 1.36E-38 dispersed
Lsi09g00720 Lsi-Chr9:8278768 Lsi01g00619 Lsi-Chr1:4972022 7.96E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83893 PF00069 Pkinase 8.00E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00720 - - csv:101208987 2163.27