Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00725 ATGGCGGGAGTAGAATTGCTGGACATGTTTCCTCATCGGGACCTGGAAGAGGGAGCAACTGGTTCGTCTGATTGGAATCCAACTGATGCTGTGCTGTTTGTTGGACTGAGTTTGGTGCTTGGAATTGCTTGCAGACACCTATTGCGAGGCACCAGAGTTCCTTATACAGTTGCCTTGCTTGTCCTTGGCATAGTTCTTGGATCCATTGGTTCGTTTCTTCTTTTCTTCTCGTTTAATTTAAAATATGGCACACATCATCAATTGGGAAAGATAGGGGACGGCATACGTCTCTGGGCAAAAATTGATCCTGATCTATTACTGGCTGTTTTCCTCCCTGCTTTGCTGTTCGAGAGTTCCTTTTCAATGGAAGTGCACCAAATAAAGAGGTGTCTGGCCCAAATGATCTTATTGGCTGGTCCAGGTGTTTTAATTTCAACCCTCTTGTTAGGATCTGCTTTCAAGCTCACTTTCCCATATAATTGGAGTTGGAAAACATCGTTGTTGCTTGGGGGACTTCTGAGTGCCACAGATCCTGTGGCTGTTGTAGCTCTATTGAAAGAGCTAGGAGCAAGTAAAAAACTGAATACGATAATAGAAGGAGAATCCTTGATGAATGATGGGACAGCAATTGTGGTTTATCAACTTTTTTATCAAATGGTCCTTGGAAAGAGCTTTAATTGGGGAGCTATAATCAAATATCTCACTCAAGTCTCGCTGGGAGCTTTGGGAATTGGTCTTGCTTTTGGGATTGCATCTGTTTTATGGCTCGGGTTCATTTTCAACGACACAGTGATAGAGATTGCATTAACACTAGCTGTGAGCTATCTTGCATACTTCACTACAAACACAACAATATACCAAGATGTTTTTTCTTGCATACCAAACGACCTCATAAATTCCAGAGCTGGACTGAGACAGAGCGTTAGGATCTGGAAAGAGCGACTGGGACACACGACAATAGATTTAGGAATTGCCCCTGAGAAGCTTGAGTTTTATAAGAATGGAGAAATTGAAAGGATTGATCCAATGGAAAGATTAAGTTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTGGAATTCCTGAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTACTATGCATCTCTAGTTTTTCATTAA 1149 42.04 MAGVELLDMFPHRDLEEGATGSSDWNPTDAVLFVGLSLVLGIACRHLLRGTRVPYTVALLVLGIVLGSIGSFLLFFSFNLKYGTHHQLGKIGDGIRLWAKIDPDLLLAVFLPALLFESSFSMEVHQIKRCLAQMILLAGPGVLISTLLLGSAFKLTFPYNWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNWGAIIKYLTQVSLGALGIGLAFGIASVLWLGFIFNDTVIEIALTLAVSYLAYFTTNTTIYQDVFSCIPNDLINSRAGLRQSVRIWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASLVFH 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8355604 8360966 + Lsi09G007250.1 Lsi09g00725 670338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00725 382 Gene3D - 162 214 - -
Lsi09g00725 382 Pfam Sodium/hydrogen exchanger family 32 282 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi09g00725 382 PANTHER - 25 284 - -
Lsi09g00725 382 PANTHER SODIUM/HYDROGEN EXCHANGER 25 284 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00725 Lsi-Chr9:8355604 Lsi11g00608 Lsi-Chr11:6426637 6.52E-36 dispersed
Lsi09g00725 Lsi-Chr9:8355604 Lsi09g01456 Lsi-Chr9:22538285 1.71E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00725 - - bhj:120067857 466.463