Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00727 ATGTTACTTCTTGCCTTCAAAGCAGTCGTAGAGTGCAAGAATTTCCATAATATTGGAGTTGTTATCGCTGAAGGAGTTCTTGGAAGCGAAGGAATTCTTAATAATGGAGCTTCATGGGGCTTCCTCATTCTGCTTTATGTGTATGTGCAAGCTTCTCGATTTATGGTTGTTGGAGTATTGTATCCATTTCTGCGGTATTTTGGATATGGATTGGATTGGAAAGAAGCTACAATACTGATATGGTCAGGTCTGCGTGGAGCTGTTGCTTTGTCACTTTCACTGTCATATATTTTCCCAATCGCTAGAAACCAAAGGAAAGGTGTGAAAGTAACCAATGGACCAAATGAATCTCTTCAGACTATTTCCATCCATGTTTTTTCCTTCTTGGTGGTTGCTTTTTTGGCTTTCTTTCTCTCCCTTTTGGGTTTGGAAAGTTGTTTCCCAGTAATTTTCCTAACCTCATGTGTTGAGGATAAAATAAGGATCAAGTTCACTCCAACTTAA 504 39.09 MLLLAFKAVVECKNFHNIGVVIAEGVLGSEGILNNGASWGFLILLYVYVQASRFMVVGVLYPFLRYFGYGLDWKEATILIWSGLRGAVALSLSLSYIFPIARNQRKGVKVTNGPNESLQTISIHVFSFLVVAFLAFFLSLLGLESCFPVIFLTSCVEDKIRIKFTPT 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8364274 8366469 + Lsi09G007270.1 Lsi09g00727 670340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00727 167 Pfam Sodium/hydrogen exchanger family 34 95 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi09g00727 167 PANTHER SODIUM/HYDROGEN EXCHANGER 7 15 145 - -
Lsi09g00727 167 PANTHER SODIUM/HYDROGEN EXCHANGER 15 145 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00727 - - - csv:101209966 152.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g567 . . . . . . . . . . . . . . . . Cpe01g01867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02250 . Cma04g02154 . Car04g02089 . . . Bhi12g00994 . . . . . Lcy10g1576 Cla01g00669 Cam01g0701 Cec01g0693 Cco01g0721 Clacu01g0689 Cmu01g0664 Cre09g1843 Lsi09g00727 Csa05g01302 Chy09g00462 Cme09g01275
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031233 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00727 Lsi_Chr09 FPKM 16.760809 19.480953 2.634292 1.680748 0.829915 1.346892 1.130369 9.700401 8.803443 10.30093