Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00729 ATGAGTAGTGGTAGTGAACTTCAGTCTCTATCTTTGTTCAATTCCTCACCGTTGGGTTTTGCAATTATGGACGGCGGCGCCGCCGTCATAGACCCATCTTTCTCGCCGGCGATTTCCACCGGTTATTTGGAAGATGCGTTGGTTGAGTATAGTTCAAAACGACGCCGCTTGGATCAACATGTTCTTCAATTTGAATTCCCACAGAGCTATTGGAGTGCCCTCGAGAGTTACGATTGGAACAACCAAATTGACGATATTAACAATAATTATTATTATTATCATAATTATGACGCGATTTCTACAGATGAGGGAATAAGCACTTCGCCAAAAAGCAGAATGAGTGAGGAAACGAGTATGGAAATGTGTGGGGAAGAGGGGATGAAAACGCAAGAATTGGAGACGTTTTCGACTCCAAATTACTACTATGAACATCATCCCAATTCTTCTTCTTCATCTTCTTCGAAATTACACAAAGTTGAGGCCGAGTTTTTGGCTGATAAGGAATCCATTTTCTCCATGTCCCACAACCTGCCTATTTCAACAGGAAACGGTGGAAATGAAATAAAGAAGACAAAGAAGAGGAAGGTGGTGTATCCATTTGCATTAGTGAAGCCAGGAGGTATAGAAGGTGATATGACCTTAAACGACATAAACCAAAAGATTTTAATGCCTCCAACCCGGCCGGTCCGACACCCAGTCGGAGATTTCGCGTGTAGACCGTGCGTGTCGGCTGACGGACCGGGGCTGTCGGGCAAAGCCGTGGTGGCGTTGACCAAAATTCATACTCAAGGAAGGAGAGGCACCATCACCATTATTAGAACCAAGGGTTAA 831 44.4 MSSGSELQSLSLFNSSPLGFAIMDGGAAVIDPSFSPAISTGYLEDALVEYSSKRRRLDQHVLQFEFPQSYWSALESYDWNNQIDDINNNYYYYHNYDAISTDEGISTSPKSRMSEETSMEMCGEEGMKTQELETFSTPNYYYEHHPNSSSSSSSKLHKVEAEFLADKESIFSMSHNLPISTGNGGNEIKKTKKRKVVYPFALVKPGGIEGDMTLNDINQKILMPPTRPVRHPVGDFACRPCVSADGPGLSGKAVVALTKIHTQGRRGTITIIRTKG 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8399375 8401574 - Lsi09G007290.1 Lsi09g00729 670342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00729 276 PANTHER XRI1-LIKE PROTEIN 20 276 - -
Lsi09g00729 276 PANTHER PROTEIN XRI1 20 276 IPR039933 GO:0007140|GO:0007143
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00729 - - - csv:101215634 386.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01121 Lsi-Chr5:18975609 Lsi09g00729 Lsi-Chr9:8399375 1.15E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g570 Blo01g00797 . . . . . . . . . . . . . . . Cpe01g01868 . . . . . . . . . . . . . . . . Cone6ag0329 . . . . . . . . . . Bpe02g01946 Bma01g00511 . . Cmo04g02252 Cmo15g00910 Cma04g02155 Cma15g00875 Car04g02090 Car15g00823 Cpe13g00439 . Bhi12g00995 . . . Hepe02g2581 . Lcy10g1575 Cla01g00671 Cam01g0703 Cec01g0697 Cco01g0724 Clacu01g0691 Cmu01g0666 Cre09g1841 Lsi09g00729 Csa05g01304 Chy09g00461 Cme09g01269
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009291 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00729 Lsi_Chr09 FPKM 15.944858 17.168381 21.973883 20.584274 19.568432 20.955324 17.511282 43.071259 46.722805 46.091412