Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00732 ATGGTTTTGTCCAAAACTTTCTCTGAATCTGATGTTTCTATACATTCCACATTTGCCTCTCGCTACGTTCGGGACTCTGCTCCAAGGTTCACCATGCCTGACAACTCCATGCCCAAGGAGGCTGCCTTCCAAATCATCAACGACGAGCTCATGCTCGATGGCAACCCAAGGCTCAATCTAGCCTCCTTCGTCACCACTTGGATGGAGCCCGAATGCGATAAACTCATCATGGACTCTGTCAACAAGAACTACGTCGACATGGACGAATACCCTGTCACCACCGAGCTTCAGAACCGCTGCGTCAACATGATTGCCCATCTCTTCAACGCTCCCTTGGGAGACTCCGACACCGCCGTCGGAGTTGGGACGGTCGGGTCGTCGGAGGCCATCATGTTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAAGCGGAAGGCAGAGGGGAAGCCTTATGACAAGCCCAATATTGTGACGGGTGCTAATGTCCAAGTTTGTTGGGAGAAATTTGCGAGATACTTTGAAGTGGAGCTGAAGGAAGTTAAAGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAGGCGGTTGAGATGGTGGATGAGAATACCATTTGCGTTGCTGCCATTTTGGGGTCGACTTATAATGGGGAATTTGAAGACGTGAAGCTGTTGAATGATTTGTTGGTAGAGAAGAATAAGGAAAGTGGATGGGATACTCCCATTCACGTGGATGCAGCCAGCGGTGGGTTCATAGCGCCATTTTTGTATCCAGAGCTTGAATGGGATTTCAGGCTTCCTTTGGTGAAGAGCATCAATGTTAGTGGCCATAAGTATGGGCTTGTCTACGCTGGAATTGGTTGGGTGATTTGGAGAACCAAAGAAGATTTGCCTGAAGAACTCATTTTCCATATCAATTACCTTGGAGCAGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATTGCTCAATATTATCAACTAATCCGATTGGGTTTCGAGGGATATCAGAATGTCATGCAGAATTGTCACGACAATGCAATGGTTTTGAAGGAAGGGCTTGAAAACACAGGGAGGTTCACGATAGTGTCAAAGGACATGGGAGTTCCGGTGGTGGCGTTCTNAAAACACAGAGAGGTTCACGATAGTGTCAAAGGACATGGGAGTTCCGGTGGTGGCGTTTTCCCTGAAAGACCGAAGCCGCCACGACGAGTTTGA 1230 48.46 MVLSKTFSESDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYQNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFXKHREVHDSVKGHGSSGGGVFPERPKPPRRV 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8415685 8417082 - Lsi09G007320.1 Lsi09g00732 670345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00732 409 SUPERFAMILY PLP-dependent transferases 16 379 IPR015424 -
Lsi09g00732 409 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 386 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi09g00732 409 PANTHER GLUTAMATE DECARBOXYLASE 1 385 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi09g00732 409 Gene3D - 1 65 - -
Lsi09g00732 409 MobiDBLite consensus disorder prediction 386 409 - -
Lsi09g00732 409 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 379 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lsi09g00732 409 PANTHER GLUTAMATE DECARBOXYLASE 1 385 - -
Lsi09g00732 409 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00732 Lsi-Chr9:8415685 Lsi09g00904 Lsi-Chr9:10924604 4.35E-14 dispersed
Lsi09g00732 Lsi-Chr9:8415685 Lsi09g00733 Lsi-Chr9:8445567 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00732 K01580 - csv:101208026 765.763