Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00733 ATGGTTTTTTCAGAATCAGATGAGTATATACATTCAACATTTGGCTCTCGCTATGTCCAGAATCCTACACCAAAGTTTATAATCCCCCAAAACTCCATGCCTAAGGAGGCTGCTTTTCAAATCATCAACGACGAACTCATGCTCGATGGAAATCCAAGGCTTAATTTGGCTTCCTATGTCACCACTTGGATGGAGCCTGAATGCAATAAGCTCATCATCGACTCTGTCAACAAGAACTTAGTCAACATGGACGAGTACCCTGTCACCACCGAGATTCAGACCCGATGCGTCAATATGATTGCCCATCTCTTCAACGCTCCCTTGGGACACTCCGACACCGCCACCGGAACTGGGACTGTGGGATCGTCGGAGGCCATCATGTTGGCCGGGCTTGCCTTCAAGAAGAAGTGGCAGAGCAAGCGGAAGGCAGAGGGGAAGCCTTACGACAATCCCAATATCGTGACGGGTGCGAATTTCCATGTTTGCTGGGAGAAATTTGCGAGATACTTTGACGTGGAGCTCAGGGAAGTGAAAGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAGGCGGTTGAGATGGTGGATGAGAATACCATTTGCGTTGCGGCCATTTTGGGGTCAACTTATAATGGGGAATTTGAAGACGTGAAGCTGTTGAATGATTTGTTGGTTCAGAAGAATAAGGAAAGTGGATGCGATACTCCCATTCATGTGGATGCGGCTAGCGGTGGATTCATAGCGCCATTTTTGTATCCAGAGCTTGAATGGGATTTCAGGCTTCCTTTGGTGAAGAGCATCAATGTTAGTGGCCATAAGTATGGGCTTGTCTACGCTGGAATTGGTTGGGTGATATGGAGAACCAAAGAAGATATGCCTGAAGAGCTTATTTTTCATATCAATTACCTTGGAGCGGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGTCAAATCATTGCTCAATATTACCAACTAATCCGGTTGGGTTTTGAGGGATATCGGAATGTGATGCAGAATTGTCAGGACAATGCAATGGTGTTGAAGGAAGGGCTTGAAAACACAGGGAGGTTTACGATAGTGTCAAAGGAGAAGGGAGTGCCGGTGGTGGCGTTTTGCCTGAAAGACCGGAGTCGCCACGACGAGTTTGAGGTGTCAGAGATGTTGCGGCGGTTTGGGTGGATCGTGCCGGCTTATCCAATGCCGGAGGGTGCCAAACATGTGTCTGTTCTTCGAGTTGTGGTTAGAGTAGATTTTTCTAGGAATCTTGCAGAGCGTCTTGTGATTGATATGATGAAGGTTGTGGAAGAGCTGGATGATCGACCATCAAAGAATACTGCAAAAATCACAAGCTTGGAAAAAGATGTTTCCATACATTCCACATTTGCCTCTCGCTACGTTCGGGACTCTGCTCCAAGGTTCACCATGCCCGACAACTCCATGCCCAAGGAGGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCAAGGCTCAATTTAGCCTCCTTCGTTACCACTTGGATGGAGCCCGAATGCGATAAGCTCATCATGGACTCTGTCAACAAGAACTACGTCGACATGGACGAATACCCTGTCACCACCGAGCTTCAGAACCGCTGCGTCAACATGATTGCCCATCTCTTCAACGCTCCCTTGGGAGACTCCGACACCGCCGTCGGAGTTGGGACGGTCGGGTCGTCCGAGGCCATCATGCTGGCAGGCCTTGCCTTCAAGAGGAAGTGGCAGAACAAGCGGAAGGCAGAGGGGAAGCCTTATGACAAGCCCAATATTGTGACTGGTGCCAATGTGCAAGTTTGTTGGGAGAAATTTGCAAGATACTTTGAAGTAGAGCTGAAGGAAGTTAAAGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAGGCGGTTGAGATGGTGGATGAGAACACCATTTGCGTTGCTGCCATTTTGGGGTCAACTTATAATGGGGAATTTGAAGACGTAAAGCTGCTGAATGATTTGTTGGTAGAGAAGAATAAGGAAAGTGGATGGGATACGCCCATTCACGTGGATGCGGCCAGCGGGGGATTCATAGCGCCATTTTTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTATGGTGAAGAGCATCAATGTTAGTGGCCATAAGTATGGGCTTGTCTACGCTGGAATCGGTTGGGTGATTTGGAGAACCAAAGAAGATTTGCCTGAAGAACTCATTTTCCATATCAATTACCTTGGAGCAGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATTGCTCAATATTATCAACTAATCCGATTGGGTTTCGAGGGATATCAGAATGTCATGCAGAATTGTCATGACAATGCAATGGTGTTGAAGGAAGGGCTTGAAAACACAGGGAGGTTCACGATAGTGTCAAAGGACATGGGAGTTCCGGTGGTGGCGTTCTCTCTCAAAGACCGAAGCCGCCACGATGAATTTGAGGTTTCAGAGATGTTGCGGCGGTTTGGGTGGATTGTGCCGGCGTATCCAATGCCGGAAGGGGCGAAGCACGTGTCAGTTCTTCGTGTGGTGATTAGAGAAGATTTCTCTCGCACGCTTGCGGAGAGGCTTGTACTTGATATCGTAAAGGTTTTGGCAGAGTTAGATACTCTTCCACCCAAAAATGGTGGAAATGAAACGGGTGGGAAGAAGACGGTAGAGGAAACAGAGAGGGAAATAGCGACTTATTGGAGGAATATAACGAAGGCTAGGAAAATCAGGCTTGCTGCTAGCCAGGCTGGTCCTTCAGTTACAGTCATTGCCAAATAA 2835 47.97 MVFSESDEYIHSTFGSRYVQNPTPKFIIPQNSMPKEAAFQIINDELMLDGNPRLNLASYVTTWMEPECNKLIIDSVNKNLVNMDEYPVTTEIQTRCVNMIAHLFNAPLGHSDTATGTGTVGSSEAIMLAGLAFKKKWQSKRKAEGKPYDNPNIVTGANFHVCWEKFARYFDVELREVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVQKNKESGCDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDMPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCQDNAMVLKEGLENTGRFTIVSKEKGVPVVAFCLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVVRVDFSRNLAERLVIDMMKVVEELDDRPSKNTAKITSLEKDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPMVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYQNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNGGNETGGKKTVEETEREIATYWRNITKARKIRLAASQAGPSVTVIAK 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8445567 8454388 + Lsi09G007330.1 Lsi09g00733 670346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00733 944 Gene3D - 1 61 - -
Lsi09g00733 944 Gene3D - 448 511 - -
Lsi09g00733 944 PANTHER GLUTAMATE DECARBOXYLASE 2 452 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi09g00733 944 PANTHER GLUTAMATE DECARBOXYLASE 455 928 - -
Lsi09g00733 944 SUPERFAMILY PLP-dependent transferases 7 440 IPR015424 -
Lsi09g00733 944 PANTHER GLUTAMATE DECARBOXYLASE 2 452 - -
Lsi09g00733 944 SUPERFAMILY PLP-dependent transferases 461 890 IPR015424 -
Lsi09g00733 944 PANTHER GLUTAMATE DECARBOXYLASE 455 928 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi09g00733 944 CDD DOPA_deC_like 505 885 - -
Lsi09g00733 944 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 12 440 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi09g00733 944 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 462 890 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi09g00733 944 Gene3D - 357 444 - -
Lsi09g00733 944 Gene3D - 807 894 - -
Lsi09g00733 944 Gene3D - 512 806 IPR015421 GO:0003824
Lsi09g00733 944 Gene3D - 62 356 IPR015421 GO:0003824
Lsi09g00733 944 Pfam Pyridoxal-dependent decarboxylase conserved domain 29 377 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lsi09g00733 944 Pfam Pyridoxal-dependent decarboxylase conserved domain 479 827 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00023 Lsi-Chr2:277992 Lsi09g00733 Lsi-Chr9:8445567 0 dispersed
Lsi09g00733 Lsi-Chr9:8445567 Lsi09g00904 Lsi-Chr9:10924604 6.94E-33 dispersed
Lsi09g01734 Lsi-Chr9:25987111 Lsi09g00733 Lsi-Chr9:8445567 8.37E-07 dispersed
Lsi09g00731 Lsi-Chr9:8415330 Lsi09g00733 Lsi-Chr9:8445567 1.14E-12 proximal
Lsi09g00732 Lsi-Chr9:8415685 Lsi09g00733 Lsi-Chr9:8445567 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00733 K01580 - csv:101208026 949.888