Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00736 ATGAATTCCAGTTCGACAAAGCAGCAATCTTCCAAAAGTAGTAGCATTTTATCTAGATTGGCCCAGCGTTTCCCCTTGGTTTTTAAGCTTTTATGGAAACCTCAAGAACCATTGGAGGAAGATGAAGAAAGTGACATGCTTGAAGATGCAAGTCCTTCCATTGTAAGACAGTCATCAGACTTTGATGTGGACATAACGAAAATTGCTTCAGAGGGCATGGATGAAGATTTTTATCATGGCATAGAAACTGAAAATCGCCAAACATCCAATTGCAGTGATTTAGTCAGTTCAAGTGATTCTGAACAACTTGAGGCTGGACTGTTAGAAACTGATGTGAATTCTTTGCCTTTTAGCAATGGAATTAGTAGAGGAGCTTCTTTTCGCAGAGACCCCCTCCACAGATGGAATTTGGGTCCAGGACATCAGATCGCACAGCAGTGGGCCAGAGAAAGAGCTGCTGACTCTGAGTTGGCTTCTGCACTTGACAATATAAGCATATTTGACCTCCCAGTCGGAGTGAGACCTTCAGAAGAGCTCCAAGATAAAGCCTTTCCAACTCCAGAGATGAAATATGAGAAGAAATCTAAGGCTTCAATTAGTACTTCCAGATTTTCTTCTCAGAATTCATTGACGGATGCAAGTTTAGAAGTGATTAAGGAATTTTACGATACCTCATCTGCATTTTTAAAAGGGACATCTGCCGACATTCCTAAGAAGCAAGGACTTCTGTCTGTTCGTGCAGCATCGATGCTGGAAGCAGAGCGAGATTCACCTAAAAAGTGGAGTCCTGTGATGGAGCTGCAGTACAGAGGTGGCATTTACAGGGGACGCTGCCAAGGAGGGCTCCCTGAAGGAAAGGGCCGTCTAGTTCTTCAAGATGGGAGCATATATGATGGTATGTGGCGATATGGTATGAGATCAGGTCAAGGAACAGTTTACTTCAACAATGGAGATATGTTTCAGGGATTATGGAGGGATGATGTCATGCATGGAAAGGGGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCTTATGGAGAAGGTCGCTTCTACTCAAAGTCAGGTGATGTCTTATTTGGTCATTTCCAAGATGGATGGCGTCATGGCGACTTTCTTTGCATTAATGTTGATGGTTCAAGGTCGATATATAGAAGTTTGGAATGAAGGTTATCTTTTGGGACGTGAGAATTTGGAGTCCGGTGCTGATACTGCATAA 1218 43.19 MNSSSTKQQSSKSSSILSRLAQRFPLVFKLLWKPQEPLEEDEESDMLEDASPSIVRQSSDFDVDITKIASEGMDEDFYHGIETENRQTSNCSDLVSSSDSEQLEAGLLETDVNSLPFSNGISRGASFRRDPLHRWNLGPGHQIAQQWARERAADSELASALDNISIFDLPVGVRPSEELQDKAFPTPEMKYEKKSKASISTSRFSSQNSLTDASLEVIKEFYDTSSAFLKGTSADIPKKQGLLSVRAASMLEAERDSPKKWSPVMELQYRGGIYRGRCQGGLPEGKGRLVLQDGSIYDGMWRYGMRSGQGTVYFNNGDMFQGLWRDDVMHGKGIGGLQTSGRERLMEKVASTQSQVMSYLVISKMDGVMATFFALMLMVQGRYIEVWNEGYLLGRENLESGADTA 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8481272 8485810 - Lsi09G007360.1 Lsi09g00736 670349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00736 405 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 5 333 - -
Lsi09g00736 405 Gene3D - 276 359 - -
Lsi09g00736 405 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 271 334 - -
Lsi09g00736 405 Pfam MORN repeat 297 319 IPR003409 -
Lsi09g00736 405 Pfam MORN repeat 279 295 IPR003409 -
Lsi09g00736 405 Pfam MORN repeat 320 333 IPR003409 -
Lsi09g00736 405 SMART morn 318 339 IPR003409 -
Lsi09g00736 405 SMART morn 295 316 IPR003409 -
Lsi09g00736 405 SMART morn 272 293 IPR003409 -
Lsi09g00736 405 PANTHER PROTEIN ACCUMULATION AND REPLICATION OFS PROTEIN 5 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00736 - - - csv:101217933 588.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00736 Lsi-Chr9:8481272 Lsi03g01984 Lsi-Chr3:31225926 9.53E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1110 . . Bda01g01766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01940 . . . . Cmo15g00905 . Cma15g00870 . Car15g00817 . . Bhi12g01003 . . . . . Lcy10g1569 Cla01g00679 Cam01g0711 Cec01g0703 Cco01g0732 Clacu01g0697 Cmu01g0672 Cre09g1833 Lsi09g00736 Csa05g01314 Chy09g00454 Cme09g01260
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009880 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00736 Lsi_Chr09 FPKM 17.042877 17.672112 15.962879 15.914841 52.314461 47.201038 46.524937 16.031488 16.396357 15.665223