Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00756 ATGAATGGAGATGTAACTCCGGCCGCCGCTCCGGCGGGCTCAGCCGAGCCCCAGTACATCAGGGCTAAGACTTCTGTATGGTGGGACATCGAGAACTGTCAGGTTCCTAAGGGCTGCGATCCTCACGCCATCGCCCAGAATATTAGTTCCGCCCTCGTTAATATCAACTATTGCGGCCCTGTTTCCATTTCCGCTTACGGAGATACTAATCGCATTCCCAATACTATTCAGCAAGCTCTTTCCAGTACTGGCATCGCCTTGAATCACGTCCCTGCCGGTGTTAAAGATGCAAGTGACAAGAAGATTCTAGTCGATATGTTGTTTTGGGCAGTTGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCTGGTGATAGGGATTTTTCTAACGCACTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCACAGCCACAAAAGGCTTCTGCACCACTAGTTGCAGCAGCAAAGAGTGTTTGGCTTTGGATGAGTCTTGTAGCTGGAGGACCCCCAATGTCCTGTGCTGAATCATCTCAACTTGTGAATGTTATCCTTACTTCTGACCCTCAAATATCACAGAGCTCTGGATTTGATCATAATCAGCAGACAGGACAAGCTATAGTATACAAATCTGAAAATGTCTCTTTGGGAAACCAAAGATCGTATTCTACTGAGAGGATGGGCGACAACAAACATAAAGGTAAATATATACAGAAAAGCTCCAACCAACCAGTCCTATCTAGAGCTTTAAGCTCACCTGTTTCCATGCAAGAGAAAAACCCTAATTTTTTAAACCAACCAAATCATATGCAAGCAAAGCAGTTTAAGAAAGCACCCCATGAATTCTTTGGTAATAGCAATCCTGTAGCCTCTTCTAGTCAGTCTACTCCAAACCCGTTTATTGAAAATTCCAGTCATGCTAGGACTGATGGCAATGTTTCAATGGGTAGTTCCTCAAGTTACCAACCTCCTCTCATGGGTCATGCTAGGACTGATGGCAATATTTCAATGGGTAGTTCCTCAAGTTACCAACCTCCCCACATGAGGCAAAACAACATGCAGCTCCGTCCTCCTTTTCGACCAGATAATGTTTTTCCTCCTAACTCCCTTAATCATAGTTCTTTTCCAGTCCCTGGTCAACCTGATCTCTCTGCACCCAATATTAATAAGCTACATATCTCTGATTATCCCAATTATGCTATAAATCCTCAAAATTTCCATCATCAAGCTGGTGAATTTAGACCACATACCAAGTCTCAAAATCCTGCTAACTTTAATTCACCAGACAAAGGCCGTAGTCAGCATGGTGGTCAATCATTCCATCATGATGCATTGAATAAAAGACATGCTCGTGATGTAGTAGAGTGTACACCTCATTCATCTTCTACCACTGTTACTAGAAGTTTATCTTACAATGATGCTTGGGGATCTCAGGGGCAACCACCACCTTCAGAGTACGTTCAAGGCCTTATTGGAGTTATTCTTCTTGCATTGAACACCCTGAAAACAGAAAGAATTATGCCAACTGAGGCAAATATAGCTGACTGCATCCGATATGGAGATTTGAGAAACAGCAATACTGATGTAAAAATGGCACTAGATAGTGCAATAGAGCATAATATGGTAGTGAAGCAGAATTTAGGAGCAGTGCAATTGTATGTTGGTAAAACAGAAAAACTGTGGAGGTGTGTGAACCCTCTAGGTGGGTATCCTAATCAATACCAAAAAGCTATATGGGATAAGATTCATAATTGTTTGGCTTCTCCAGCTGGTCGATCTGCAATAATGGCTTCTCGTTGCAGATATGAAGCAGCATTGATTCTGAAGAAAGAATGCTTAACAGATTTTGCCTTGGGCGATGTGCTTCAGATTTTGAATATGATAACCTCAATGAAGAAATGGATTACTCATCATAGTTCGGGATGGCAGCCAATTAATATTATGCTAACAGAAGGCAATACGGATGCAAGTTCAAGAACTGAACTTGATTGA 1998 41.84 MNGDVTPAAAPAGSAEPQYIRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVNINYCGPVSISAYGDTNRIPNTIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWMSLVAGGPPMSCAESSQLVNVILTSDPQISQSSGFDHNQQTGQAIVYKSENVSLGNQRSYSTERMGDNKHKGKYIQKSSNQPVLSRALSSPVSMQEKNPNFLNQPNHMQAKQFKKAPHEFFGNSNPVASSSQSTPNPFIENSSHARTDGNVSMGSSSSYQPPLMGHARTDGNISMGSSSSYQPPHMRQNNMQLRPPFRPDNVFPPNSLNHSSFPVPGQPDLSAPNINKLHISDYPNYAINPQNFHHQAGEFRPHTKSQNPANFNSPDKGRSQHGGQSFHHDALNKRHARDVVECTPHSSSTTVTRSLSYNDAWGSQGQPPPSEYVQGLIGVILLALNTLKTERIMPTEANIADCIRYGDLRNSNTDVKMALDSAIEHNMVVKQNLGAVQLYVGKTEKLWRCVNPLGGYPNQYQKAIWDKIHNCLASPAGRSAIMASRCRYEAALILKKECLTDFALGDVLQILNMITSMKKWITHHSSGWQPINIMLTEGNTDASSRTELD 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8670354 8674425 + Lsi09G007560.1 Lsi09g00756 670369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00756 665 MobiDBLite consensus disorder prediction 221 247 - -
Lsi09g00756 665 Gene3D - 18 166 - -
Lsi09g00756 665 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 12 648 - -
Lsi09g00756 665 MobiDBLite consensus disorder prediction 417 436 - -
Lsi09g00756 665 PANTHER LIMKAIN B LKAP 12 648 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lsi09g00756 665 Pfam OST-HTH Associated domain 600 654 IPR025677 -
Lsi09g00756 665 MobiDBLite consensus disorder prediction 413 446 - -
Lsi09g00756 665 MobiDBLite consensus disorder prediction 290 348 - -
Lsi09g00756 665 Pfam NYN domain 23 159 IPR021139 GO:0004540
Lsi09g00756 665 MobiDBLite consensus disorder prediction 290 327 - -
Lsi09g00756 665 CDD PIN_limkain_b1_N_like 23 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00206 Lsi-Chr5:2832818 Lsi09g00756 Lsi-Chr9:8670354 1.50E-33 dispersed
Lsi09g00756 Lsi-Chr9:8670354 Lsi10g00700 Lsi-Chr10:9783469 2.37E-41 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00756 - - cmo:103503825 1241.87