Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00778 ATGAATGGGAAGGATGAATTTGAAGTTGAGAATAGGACGAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTTCTGCTGCTAATCTCACTAATGAGTCTGTCGGATTCATTTCGACCGGGAATCCTTCTGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATGTCTAACTTATTTACTCCAACCCTTTTGAACCATCATACCGAGTCGCAAAACTCGGGATTCTGCACCACTTTTAATGAACAAAGCAGCATAGTTGCTTCTAATACGAATGTAGTTGATGGAGAGGGTCTGAATTCTTTCAGATCTAATGGTGATACTATAACGCTGGGTATTGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTTTCAGGAAACGTTCCTGGAATATTTCCAGCTAATTTGTCTCAACTTCCAGCTGATTCGGCATTCATAGAACGTGCAGCAAGGTTCTCCTGCTTCAATAGCGGAGTTTTTGGGGCTCTGCCTGCCGGTACATTTGGCATTTCAGACTCTATAGGCATTCATTCTGGGGGTGGATTTGAAAGGCAAGAAGTTATTTCAAGAAATGGAGCCTCCAAAGATGTTTCTTTGCCCATAGAGCTTGAGGCTAAAGAAAAGATTCCACCTAAGAATGAGAAAGATAGCGACATGTCTCAAGACAGGACTAAACAGGGTTGTGTTGGTGAGTCTGGCAATGATTCTGATGAAGCTGGGTTCAGTGGTGGTCAAGACGAGCGATGCACGTTGGGAGGTACCATCACAGAACCATCTACAGAAGAACTGTGCTTCAAGAAAAGGAAAAGGGGTGAGCAGAATGTGGGAATTGGACAAGTTAAAGAAGCTCCACAACAAATCAATGAAACTGCAAAGAATGGAGCATTCAATCAGCAGAAGGGAGACCAAAACCCAAGTTCTACTACAAATAAGCCTGCTGCGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAAGAAGAATACATTCACGTTAGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTTAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGATCTTGTGCCCGGGTGTAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTTGATTTTAACATCGAGGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCTGGTCCATCCTTGTTCGGTTTTCCTCCTGATCTGCCTGTACCTTACCTCCCACAGCATCCATCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAGCTCTCCGGACCTGCTACGAAGAACAATTAGTTCCCAGCTGACATCACTCATTGGTGGATTCAAGGAGCCTGTTCAGCTACCGAACCGATGGGAGAATGAGCTCCACAATGTTGTTCCGATGAACTTTGATGTAGCTGCACCCTCCAGTAGCCAAGATGTTGATGGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA 1602 44.07 MNGKDEFEVENRTSDPMSISSGWQFSAANLTNESVGFISTGNPSVVSNGDLGVSSCPSTSMSNLFTPTLLNHHTESQNSGFCTTFNEQSSIVASNTNVVDGEGLNSFRSNGDTITLGIDWNQQNPWMKGVFSGNVPGIFPANLSQLPADSAFIERAARFSCFNSGVFGALPAGTFGISDSIGIHSGGGFERQEVISRNGASKDVSLPIELEAKEKIPPKNEKDSDMSQDRTKQGCVGESGNDSDEAGFSGGQDERCTLGGTITEPSTEELCFKKRKRGEQNVGIGQVKEAPQQINETAKNGAFNQQKGDQNPSSTTNKPAAKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEIIQSKAGPSLFGFPPDLPVPYLPQHPSHHGLIPPCLPNMGSSPDLLRRTISSQLTSLIGGFKEPVQLPNRWENELHNVVPMNFDVAAPSSSQDVDGSTPQCNTRAEL 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8827021 8830851 - Lsi09G007780.1 Lsi09g00778 670391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00778 533 Pfam Helix-loop-helix DNA-binding domain 350 398 IPR011598 GO:0046983
Lsi09g00778 533 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 40 531 IPR024097 GO:0006355
Lsi09g00778 533 MobiDBLite consensus disorder prediction 301 334 - -
Lsi09g00778 533 MobiDBLite consensus disorder prediction 1 20 - -
Lsi09g00778 533 MobiDBLite consensus disorder prediction 207 229 - -
Lsi09g00778 533 CDD bHLH_AtBPE_like 337 422 - -
Lsi09g00778 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
Lsi09g00778 533 MobiDBLite consensus disorder prediction 301 328 - -
Lsi09g00778 533 MobiDBLite consensus disorder prediction 206 261 - -
Lsi09g00778 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 416 IPR036638 GO:0046983
Lsi09g00778 533 MobiDBLite consensus disorder prediction 512 533 - -
Lsi09g00778 533 PANTHER TRANSCRIPTION FACTOR BHLH49 40 531 - -
Lsi09g00778 533 SMART finulus 353 403 IPR011598 GO:0046983
Lsi09g00778 533 Gene3D - 344 418 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01710 Lsi-Chr3:28461856 Lsi09g00778 Lsi-Chr9:8827021 2.37E-38 dispersed
Lsi04g00328 Lsi-Chr4:3368247 Lsi09g00778 Lsi-Chr9:8827021 5.01E-139 dispersed
Lsi04g01455 Lsi-Chr4:22304152 Lsi09g00778 Lsi-Chr9:8827021 2.51E-53 dispersed
Lsi05g01353 Lsi-Chr5:21424922 Lsi09g00778 Lsi-Chr9:8827021 1.32E-63 dispersed
Lsi06g01672 Lsi-Chr6:26959007 Lsi09g00778 Lsi-Chr9:8827021 2.22E-39 dispersed
Lsi08g00756 Lsi-Chr8:15904120 Lsi09g00778 Lsi-Chr9:8827021 3.76E-41 dispersed
Lsi08g01550 Lsi-Chr8:23556410 Lsi09g00778 Lsi-Chr9:8827021 3.18E-43 dispersed
Lsi09g00778 Lsi-Chr9:8827021 Lsi11g01112 Lsi-Chr11:19468218 5.75E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25896 PF00010 HLH 6.60E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00778 - - csv:101216110 992.645