Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00786 ATGGAAATTAGGGGGAAAAATGGGTTACTGTTTTGTCTGGTTTTGCTTTGGTTATGGGCTTTTTCAAGTGAGGCTGCAACAAACAAAGATTTTACCTATGAAGTTCAAGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATCCTCATTCTGTTCTGACTTGGGATGAAAATGCTGTGGATGCATGCACTTGGAATTTCATCACTTGCTCTCCTGATAAACTGGTCATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGTACACTCTCACCAAGTATTGCAAATTTGACAAACCTCCAATTTCTGCTTCTTCAGAATAACAATATATCAGGAAAAATCCCCAACGAGATAAGCAAGATACCTAAACTTCGCACACTTGATCTTTCAAACAACTTGTTCTCTGGTGAAATCCCCAGCTCTTTCTCCAATATGAAAAGCCTTCAATACCTGAGACTCAACAATAACACCTTTTCAGGGCCAATCCCAGCATCACTGGCTAACATGACCCAGCTTTCCCTGCTGGACCTGTCCTATAATAATTTGAGCAGTCCTGTGCCCAGATTGCTGGCTAAGACATTTAACTTTACTGGAAACTCTTTGATTTGTTCCCCTGGAATTAAGGAAGTATGCTATGGAACAACTCCATTGCCACTTTCTTTTGCTGTTAGTAATTCCACATACTCTCAACCTCCTAGGAGACACAAAGGCCAGAGAATTGCCTTAGTCATTGGTCTCAGCTTGAGCTGCATCTGTCTGTTCACTCTTGCATATGGTTTCTTTTGCTGGCGGAAGCATAGGCACAACCAGCAAATATTCTTTGAAGCTAATGATTGGCATCGGGAAGAACATAGCTTAGGGAACGTAAAGAGGTTTCATTTCAGAGAACTTCAGAATGCTACTCACAATTTCAGCAGTAAAAACTTGGTTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTGTAGCTGTCAAGAGACTCAAAGATGGGAATGCTATGAGAGGAGAGATCCAGTTTCAGACTGAAGTGGAAATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAGATTGTACGGTTTCTGTATGACAGAAACCGAGAGGCTTTTGGTCTATCCATACATGTCGAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCTAGGGGCTTGTTATACCTACATGAACAGTGTGATCCAAAAATAATTCACAGGGATGTGAAAGCTGCAAACATACTGCTTGATGATTTCTGTGAGGCAGTGGTGGGTGATTTTGGGCTGGCAAAGCTGTTAGATCACAGAGATTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTATCAACAGGCCAATCCTCAGAGAAAACAGACGTTTTCGGCTTCGGAATTCTACTACTTGAGCTCATATCAGGTCAAAGAGCTCTTGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAGGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAAAAGTAATTATGACCCGATCGAACTTGAAGAAATTGTTCGAGTAGCTCTCTTGTGCATTCAATATCTTCCAAGCCACAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTTGAGGGAGACGGGCTTGCAGAGAAATGGGAAGCTTCCCAAAGAGCAGAAGCAAGCAGGAGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACTGATGACTCTTCATTGTTTGCTCATGCGATAGAGCTCTCGGGACCGAGATAA 1872 43.16 MEIRGKNGLLFCLVLLWLWAFSSEAATNKDFTYEVQALMGIKAALKDPHSVLTWDENAVDACTWNFITCSPDKLVIGIGAPSQNFSGTLSPSIANLTNLQFLLLQNNNISGKIPNEISKIPKLRTLDLSNNLFSGEIPSSFSNMKSLQYLRLNNNTFSGPIPASLANMTQLSLLDLSYNNLSSPVPRLLAKTFNFTGNSLICSPGIKEVCYGTTPLPLSFAVSNSTYSQPPRRHKGQRIALVIGLSLSCICLFTLAYGFFCWRKHRHNQQIFFEANDWHREEHSLGNVKRFHFRELQNATHNFSSKNLVGKGGFGNVYRGYLQDGTIVAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLKSNYDPIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRSRANEFSSSERYSDLTDDSSLFAHAIELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8919148 8926865 - Lsi09G007860.1 Lsi09g00786 670399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00786 623 Pfam Protein kinase domain 304 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00786 623 MobiDBLite consensus disorder prediction 583 605 - -
Lsi09g00786 623 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515
Lsi09g00786 623 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Lsi09g00786 623 SUPERFAMILY Protein kinase-like (PK-like) 282 573 IPR011009 -
Lsi09g00786 623 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00786 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 623 - -
Lsi09g00786 623 MobiDBLite consensus disorder prediction 590 605 - -
Lsi09g00786 623 SMART serkin_6 303 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00786 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Lsi09g00786 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Lsi09g00786 623 SUPERFAMILY L domain-like 34 203 - -
Lsi09g00786 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Lsi09g00786 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Lsi09g00786 623 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 9 623 - -
Lsi09g00786 623 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g00318 Lsi09g00786 CCT
Lsi04g00318 Lsi09g00786 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00318 Lsi-Chr4:3258592 Lsi09g00786 Lsi-Chr9:8919148 0 dispersed
Lsi06g01088 Lsi-Chr6:21174193 Lsi09g00786 Lsi-Chr9:8919148 0 dispersed
Lsi08g01665 Lsi-Chr8:24413379 Lsi09g00786 Lsi-Chr9:8919148 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83894 PF00069 Pkinase 3.90E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00786 - - csv:101222667 1135.17