Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00786 | ATGGAAATTAGGGGGAAAAATGGGTTACTGTTTTGTCTGGTTTTGCTTTGGTTATGGGCTTTTTCAAGTGAGGCTGCAACAAACAAAGATTTTACCTATGAAGTTCAAGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATCCTCATTCTGTTCTGACTTGGGATGAAAATGCTGTGGATGCATGCACTTGGAATTTCATCACTTGCTCTCCTGATAAACTGGTCATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGTACACTCTCACCAAGTATTGCAAATTTGACAAACCTCCAATTTCTGCTTCTTCAGAATAACAATATATCAGGAAAAATCCCCAACGAGATAAGCAAGATACCTAAACTTCGCACACTTGATCTTTCAAACAACTTGTTCTCTGGTGAAATCCCCAGCTCTTTCTCCAATATGAAAAGCCTTCAATACCTGAGACTCAACAATAACACCTTTTCAGGGCCAATCCCAGCATCACTGGCTAACATGACCCAGCTTTCCCTGCTGGACCTGTCCTATAATAATTTGAGCAGTCCTGTGCCCAGATTGCTGGCTAAGACATTTAACTTTACTGGAAACTCTTTGATTTGTTCCCCTGGAATTAAGGAAGTATGCTATGGAACAACTCCATTGCCACTTTCTTTTGCTGTTAGTAATTCCACATACTCTCAACCTCCTAGGAGACACAAAGGCCAGAGAATTGCCTTAGTCATTGGTCTCAGCTTGAGCTGCATCTGTCTGTTCACTCTTGCATATGGTTTCTTTTGCTGGCGGAAGCATAGGCACAACCAGCAAATATTCTTTGAAGCTAATGATTGGCATCGGGAAGAACATAGCTTAGGGAACGTAAAGAGGTTTCATTTCAGAGAACTTCAGAATGCTACTCACAATTTCAGCAGTAAAAACTTGGTTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTGTAGCTGTCAAGAGACTCAAAGATGGGAATGCTATGAGAGGAGAGATCCAGTTTCAGACTGAAGTGGAAATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAGATTGTACGGTTTCTGTATGACAGAAACCGAGAGGCTTTTGGTCTATCCATACATGTCGAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCTAGGGGCTTGTTATACCTACATGAACAGTGTGATCCAAAAATAATTCACAGGGATGTGAAAGCTGCAAACATACTGCTTGATGATTTCTGTGAGGCAGTGGTGGGTGATTTTGGGCTGGCAAAGCTGTTAGATCACAGAGATTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTATCAACAGGCCAATCCTCAGAGAAAACAGACGTTTTCGGCTTCGGAATTCTACTACTTGAGCTCATATCAGGTCAAAGAGCTCTTGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGGTAAAGAAGATACACCAGGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAAAAGTAATTATGACCCGATCGAACTTGAAGAAATTGTTCGAGTAGCTCTCTTGTGCATTCAATATCTTCCAAGCCACAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTTGAGGGAGACGGGCTTGCAGAGAAATGGGAAGCTTCCCAAAGAGCAGAAGCAAGCAGGAGCAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACTGATGACTCTTCATTGTTTGCTCATGCGATAGAGCTCTCGGGACCGAGATAA | 1872 | 43.16 | MEIRGKNGLLFCLVLLWLWAFSSEAATNKDFTYEVQALMGIKAALKDPHSVLTWDENAVDACTWNFITCSPDKLVIGIGAPSQNFSGTLSPSIANLTNLQFLLLQNNNISGKIPNEISKIPKLRTLDLSNNLFSGEIPSSFSNMKSLQYLRLNNNTFSGPIPASLANMTQLSLLDLSYNNLSSPVPRLLAKTFNFTGNSLICSPGIKEVCYGTTPLPLSFAVSNSTYSQPPRRHKGQRIALVIGLSLSCICLFTLAYGFFCWRKHRHNQQIFFEANDWHREEHSLGNVKRFHFRELQNATHNFSSKNLVGKGGFGNVYRGYLQDGTIVAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHQEKKLEMLVDKDLKSNYDPIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRSRANEFSSSERYSDLTDDSSLFAHAIELSGPR | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8919148 | 8926865 | - | Lsi09G007860.1 | Lsi09g00786 | 670399 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00786 | 623 | Pfam | Protein kinase domain | 304 | 570 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g00786 | 623 | MobiDBLite | consensus disorder prediction | 583 | 605 | - | - | |
Lsi09g00786 | 623 | Pfam | Leucine rich repeat | 121 | 181 | IPR001611 | GO:0005515 | |
Lsi09g00786 | 623 | Pfam | Leucine rich repeat N-terminal domain | 33 | 70 | IPR013210 | - | |
Lsi09g00786 | 623 | SUPERFAMILY | Protein kinase-like (PK-like) | 282 | 573 | IPR011009 | - | |
Lsi09g00786 | 623 | ProSiteProfiles | Protein kinase domain profile. | 303 | 582 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g00786 | 623 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 9 | 623 | - | - | |
Lsi09g00786 | 623 | MobiDBLite | consensus disorder prediction | 590 | 605 | - | - | |
Lsi09g00786 | 623 | SMART | serkin_6 | 303 | 572 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g00786 | 623 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 422 | 434 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi09g00786 | 623 | Gene3D | Phosphorylase Kinase; domain 1 | 272 | 379 | - | - | |
Lsi09g00786 | 623 | SUPERFAMILY | L domain-like | 34 | 203 | - | - | |
Lsi09g00786 | 623 | Gene3D | Transferase(Phosphotransferase) domain 1 | 380 | 592 | - | - | |
Lsi09g00786 | 623 | ProSitePatterns | Protein kinases ATP-binding region signature. | 309 | 331 | IPR017441 | GO:0005524 | |
Lsi09g00786 | 623 | PANTHER | PROTEIN NSP-INTERACTING KINASE 2-LIKE | 9 | 623 | - | - | |
Lsi09g00786 | 623 | Gene3D | Ribonuclease Inhibitor | 31 | 212 | IPR032675 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi04g00318 | Lsi09g00786 | CCT | |
Lsi04g00318 | Lsi09g00786 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00318 | Lsi-Chr4:3258592 | Lsi09g00786 | Lsi-Chr9:8919148 | 0 | dispersed | |
Lsi06g01088 | Lsi-Chr6:21174193 | Lsi09g00786 | Lsi-Chr9:8919148 | 0 | dispersed | |
Lsi08g01665 | Lsi-Chr8:24413379 | Lsi09g00786 | Lsi-Chr9:8919148 | 0 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83894 | PF00069 | Pkinase | 3.90E-44 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00786 | - | - | csv:101222667 | 1135.17 |