Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00795 ATGGTTGTTGCTGTTGAAACCACCCGTTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATAGGAAATTGATCGAACGCCTTCTCAAAACCTCTTCCTATCATGTTACTGCTGTTGATTCCGGTACTAAGGCCTTGGAATTCCTTGGTCTTGTTGAAGATCATGATCATCATGAAGAAACAGACTCCAAAATCGCTCCCTCAAATCATCATCATCAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTATGAACTCCTCAGAAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATTATGTCCTCTGAGAATGTTCCTTCAAGAATCAATAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA 474 39.87 MVVAVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDHDHHEETDSKIAPSNHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9086452 9087877 + Lsi09G007950.1 Lsi09g00795 670408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00795 157 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 3 155 - -
Lsi09g00795 157 SUPERFAMILY CheY-like 9 146 IPR011006 -
Lsi09g00795 157 SMART REC_2 10 146 IPR001789 GO:0000160
Lsi09g00795 157 ProSiteProfiles Response regulatory domain profile. 11 150 IPR001789 GO:0000160
Lsi09g00795 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 155 IPR045279 GO:0009736
Lsi09g00795 157 Gene3D - 11 156 - -
Lsi09g00795 157 CDD REC_typeA_ARR 12 145 - -
Lsi09g00795 157 Pfam Response regulator receiver domain 12 144 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01790 Lsi-Chr1:17377008 Lsi09g00795 Lsi-Chr9:9086452 1.93E-62 dispersed
Lsi04g00029 Lsi-Chr4:449084 Lsi09g00795 Lsi-Chr9:9086452 3.73E-50 dispersed
Lsi04g00507 Lsi-Chr4:4705253 Lsi09g00795 Lsi-Chr9:9086452 4.48E-55 dispersed
Lsi04g01015 Lsi-Chr4:11453891 Lsi09g00795 Lsi-Chr9:9086452 5.32E-55 dispersed
Lsi04g01100 Lsi-Chr4:13441528 Lsi09g00795 Lsi-Chr9:9086452 1.57E-34 dispersed
Lsi06g01513 Lsi-Chr6:25558287 Lsi09g00795 Lsi-Chr9:9086452 1.53E-46 dispersed
Lsi08g00441 Lsi-Chr8:12034744 Lsi09g00795 Lsi-Chr9:9086452 2.04E-45 dispersed
Lsi09g00795 Lsi-Chr9:9086452 Lsi10g00836 Lsi-Chr10:11866514 4.73E-25 dispersed
Lsi09g00795 Lsi-Chr9:9086452 Lsi03g01597 Lsi-Chr3:26990232 2.68E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25898 PF00072 Response_reg 1.20E-20 CL0304 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00795 K14492 - csv:101210839 282.337